Belda Ignacio, Zarraonaindia Iratxe, Perisin Matthew, Palacios Antonio, Acedo Alberto
Biome Makers Inc., San FranciscoCA, USA.
Department of Microbiology, Biology Faculty, Complutense University of MadridMadrid, Spain.
Front Microbiol. 2017 May 8;8:821. doi: 10.3389/fmicb.2017.00821. eCollection 2017.
Wine originally emerged as a serendipitous mix of chemistry and biology, where microorganisms played a decisive role. From these ancient fermentations to the current monitored industrial processes, winegrowers and winemakers have been continuously changing their practices according to scientific knowledge and advances. A new enology direction is emerging and aiming to blend the complexity of spontaneous fermentations with industrial safety of monitored fermentations. In this context, wines with distinctive autochthonous peculiarities have a great acceptance among consumers, causing important economic returns. The concept of , far from being a rural term, conceals a wide range of analytical parameters that are the basis of the knowledge-based enology trend. In this sense, the biological aspect of soils has been underestimated for years, when actually it contains a great microbial diversity. This soil-associated microbiota has been described as determinant, not only for the chemistry and nutritional properties of soils, but also for health, yield, and quality of the grapevine. Additionally, recent works describe the soil microbiome as the reservoir of the grapevine associated microbiota, and as a contributor to the final sensory properties of wines. To understand the crucial roles of microorganisms on the entire wine making process, we must understand their ecological niches, population dynamics, and relationships between 'microbiome- vine health' and 'microbiome-wine metabolome.' These are critical steps for designing precision enology practices. For that purpose, current metagenomic techniques are expanding from laboratories, to the food industry. This review focuses on the current knowledge about vine and wine microbiomes, with emphasis on their biological roles and the technical basis of next-generation sequencing pipelines. An overview of molecular and informatics tools is included and new directions are proposed, highlighting the importance of -omics technologies in wine research and industry.
葡萄酒最初是化学与生物学偶然结合的产物,其中微生物起着决定性作用。从这些古老的发酵过程到如今受监控的工业生产过程,葡萄种植者和酿酒师一直在根据科学知识和进步不断改变他们的做法。一个新的酿酒学方向正在兴起,旨在将自然发酵的复杂性与受监控发酵的工业安全性相结合。在这种背景下,具有独特本土特性的葡萄酒在消费者中广受欢迎,带来了可观的经济回报。“风土”这一概念远非一个乡村术语,它蕴含着一系列广泛的分析参数,这些参数是基于知识的酿酒学趋势的基础。从这个意义上说,土壤的生物学方面多年来一直被低估,而实际上它包含着丰富的微生物多样性。这种与土壤相关的微生物群已被描述为不仅对土壤的化学和营养特性具有决定性作用,而且对葡萄藤的健康、产量和品质也具有决定性作用。此外,最近的研究表明土壤微生物群是与葡萄藤相关的微生物群的储存库,也是葡萄酒最终感官特性的贡献者。为了理解微生物在整个酿酒过程中的关键作用,我们必须了解它们的生态位、种群动态以及“微生物群 - 葡萄藤健康”和“微生物群 - 葡萄酒代谢组”之间的关系。这些是设计精准酿酒实践的关键步骤。为此,当前的宏基因组技术正从实验室扩展到食品工业。本综述聚焦于当前关于葡萄藤和葡萄酒微生物群的知识,重点关注它们的生物学作用以及下一代测序流程的技术基础。文中还包括了分子和信息学工具的概述,并提出了新的方向,强调了组学技术在葡萄酒研究和产业中的重要性。