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葡萄园风土特征的新视角:通过长读长纳米孔测序寻找微生物指示物种

A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing.

作者信息

Cruz-Silva Ana, Laureano Gonçalo, Pereira Marcelo, Dias Ricardo, Silva José Moreira da, Oliveira Nuno, Gouveia Catarina, Cruz Cristina, Gama-Carvalho Margarida, Alagna Fiammetta, Duarte Bernardo, Figueiredo Andreia

机构信息

Biosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.

Grapevine Pathogen Systems Lab, BioISI Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.

出版信息

Microorganisms. 2023 Mar 6;11(3):672. doi: 10.3390/microorganisms11030672.

Abstract

Grapevine is one of the most important fruit crops worldwide, being Portugal one of the top wine producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Murças vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.

摘要

葡萄是全球最重要的水果作物之一,葡萄牙是顶级葡萄酒生产国之一。众所周知,特定地区葡萄酒的感官特征由葡萄藤对其环境的生理反应所定义,因此,葡萄栽培中“风土”的概念得以确立。在所有有助于定义风土的因素中,土壤微生物从养分循环到对植物健康(生长和保护)以及葡萄酒生产产生重大影响都发挥着主要作用。通过长读长牛津纳米孔测序分析了昆塔斯·杜斯·穆尔卡斯葡萄园四个不同风土的土壤微生物组。我们开发了一种分析流程,能够基于长读长测序数据识别功能、生态和指示物种。以杜罗葡萄园作为案例研究,我们能够确定每个风土的微生物组特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/560c/10054463/5f4840a8a33e/microorganisms-11-00672-g001.jpg

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