寄生性卵菌菌株CBS 532.74的基因组草图序列
Draft Genome Sequence of the Mycoparasitic Oomycete Strain CBS 532.74.
作者信息
Kushwaha Sandeep K, Vetukuri Ramesh R, Grenville-Briggs Laura J
机构信息
Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.
National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Lund, Sweden.
出版信息
Genome Announc. 2017 Mar 23;5(12):e00057-17. doi: 10.1128/genomeA.00057-17.
Abstract
The oomycete is an aggressive mycoparasite of a number of plant pathogenic fungi and oomycetes and therefore has potential as a biological control agent. Here, we report the first draft genome sequence of , which comprises 35.89 Mb. It contains 1,043 scaffolds and 14,399 predicted protein-coding genes.
摘要
卵菌是多种植物病原真菌和卵菌的一种侵袭性真菌寄生菌，因此具有作为生物防治剂的潜力。在此，我们报告了其首个基因组草图序列，该序列包含35.89 Mb。它包含1043个支架和14399个预测的蛋白质编码基因。
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本文引用的文献
1
Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species.方案：一种从顽固植物物种中提取下一代测序质量基因组 DNA 的简单方法。
Plant Methods. 2014 Jun 27;10:21. doi: 10.1186/1746-4811-10-21. eCollection 2014.
2
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
3
The carbohydrate-active enzymes database (CAZy) in 2013.2013 版碳水化合物活性酶数据库（CAZy）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5. doi: 10.1093/nar/gkt1178. Epub 2013 Nov 21.
4
Informed and automated k-mer size selection for genome assembly.基于信息和自动化的基因组组装的 k-mer 大小选择。
Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.
5
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
6
Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly.路径集图：基因组组装中配对读段综合利用的新方法。
J Comput Biol. 2013 Apr;20(4):359-71. doi: 10.1089/cmb.2012.0098. Epub 2012 Jul 17.
7
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.CEGMA：一种用于准确注释真核生物基因组中核心基因的流程。
Bioinformatics. 2007 May 1;23(9):1061-7. doi: 10.1093/bioinformatics/btm071. Epub 2007 Mar 1.
8
AUGUSTUS: a web server for gene finding in eukaryotes.奥古斯塔斯：用于真核生物基因发现的网络服务器。
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12. doi: 10.1093/nar/gkh379.
9
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