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一种基于DNA的奇偶校验生成器/校验器,用于通过具有视觉读数和输出校正功能的数据传输进行错误检测。

A DNA-based parity generator/checker for error detection through data transmission with visual readout and an output-correction function.

作者信息

Fan Daoqing, Wang Erkang, Dong Shaojun

机构信息

State Key Laboratory of Electroanalytical Chemistry , Changchun Institute of Applied Chemistry , Chinese Academy of Sciences , Changchun , Jilin , 130022 China . Email:

University of Chinese Academy of Sciences , Beijing , 100039 China.

出版信息

Chem Sci. 2017 Mar 1;8(3):1888-1895. doi: 10.1039/c6sc04056j. Epub 2016 Oct 26.

Abstract

During any type of binary data transmission, the occurrence of bit errors is an inevitable and frequent problem suffered. These errors, which have fatal effects on the correct logic computation, especially in sophisticated logic circuits, can be checked through insertion of a parity generator (pG) at the transmitting end and a parity checker (pC) at the receiving end. Herein, taking even pG/pC as a model device, we constructed the first DNA-based molecular parity generator/checker (pG/pC) for error detection through data transmission, on a universal single-strand platform according to solely DNA hybridization. Compared with previous pG/pC systems, the distinct advantage of this one is that it can present not only fluorescence signals but also visual outputs, which can be directly recognized by the naked eye, using DNA inputs modulated split-G-quadruplex and its DNAzyme as signal reporters, thus greatly extending its potential practical applications. More importantly, an "Output-Correction" function was introduced into the pC for the first time, in which all of the erroneous outputs can be adequately corrected to their normal states, guaranteeing the regular operation of subsequent logic devices. Furthermore, through negative logic conversion towards the constructed even pG/pC, the odd pG/pC with equal functions was obtained. Furthermore, this system can also execute multi-input triggered concatenated logic computations with dual output-modes, which largely fulfilled the requirements of complicated computing.

摘要

在任何类型的二进制数据传输过程中,位错误的出现都是不可避免且频繁发生的问题。这些错误对正确的逻辑计算有致命影响,尤其是在复杂的逻辑电路中,可通过在发送端插入奇偶校验生成器(pG)和在接收端插入奇偶校验检查器(pC)来进行检查。在此,以偶校验pG/pC作为模型器件,我们在通用单链平台上,仅根据DNA杂交构建了首个用于数据传输错误检测的基于DNA的分子奇偶校验生成器/检查器(pG/pC)。与先前的pG/pC系统相比,该系统的独特优势在于,以经DNA输入调制的分裂型G-四链体及其DNA酶作为信号报告分子,它不仅能呈现荧光信号,还能产生肉眼可直接识别的视觉输出,从而极大地扩展了其潜在的实际应用。更重要的是,首次在pC中引入了“输出校正”功能,其中所有错误输出都能被充分校正到正常状态,确保后续逻辑器件的正常运行。此外,通过对构建的偶校验pG/pC进行负逻辑转换,获得了具有同等功能的奇校验pG/pC。此外,该系统还能执行具有双输出模式的多输入触发级联逻辑计算,很大程度上满足了复杂计算的要求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee0d/5424811/d471440dd52b/c6sc04056j-s1.jpg

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