University of Vienna , Faculty of Chemistry, Department of Biophysical Chemistry, Althanstraße 14, 1090 Vienna, Austria.
Acc Chem Res. 2017 Jun 20;50(6):1441-1448. doi: 10.1021/acs.accounts.7b00109. Epub 2017 May 31.
Protein crystallography represents at present the most productive and most widely used method to obtain structural information on target proteins and protein-ligand complexes within the atomic resolution range. The knowledge obtained in this way is essential for understanding the biology, chemistry, and biochemistry of proteins and their functions but also for the development of compounds of high pharmacological and medicinal interest. Here, we address the very central problem in protein crystallography: the unpredictability of the crystallization process. Obtaining protein crystals that diffract to high resolutions represents the essential step to perform any structural study by X-ray crystallography; however, this method still depends basically on trial and error making it a very time- and resource-consuming process. The use of additives is an established process to enable or improve the crystallization of proteins in order to obtain high quality crystals. Therefore, a more universal additive addressing a wider range of proteins is desirable as it would represent a huge advance in protein crystallography and at the same time drastically impact multiple research fields. This in turn could add an overall benefit for the entire society as it profits from the faster development of novel or improved drugs and from a deeper understanding of biological, biochemical, and pharmacological phenomena. With this aim in view, we have tested several compounds belonging to the emerging class of polyoxometalates (POMs) for their suitability as crystallization additives and revealed that the tellurium-centered Anderson-Evans polyoxotungstate [TeWO] (TEW) was the most suitable POM-archetype. After its first successful application as a crystallization additive, we repeatedly reported on TEW's positive effects on the crystallization behavior of proteins with a particular focus on the protein-TEW interactions. As electrostatic interactions are the main force for TEW binding to proteins, TEW with its highly negative charge addresses in principle all proteins possessing positively charged patches. Furthermore, due to its high structural and chemical diversity, TEW exhibits major advantages over some commonly used crystallization additives. Therefore, we summarized all features of TEW, which are beneficial for protein crystallization, and present ten good reasons to promote the use of TEW in protein crystallography as a powerful additive. Our results demonstrate that TEW is a compound that is, in many respects, predestined as a crystallization additive. We assume that many crystallographers and especially researchers, who are not experts in this field but willing to crystallize their structurally unknown target protein, could benefit from the use of TEW as it is able to promote both the crystallization process itself and the subsequent structure elucidation by providing valuable anomalous signals, which are helpful for the phasing step.
蛋白质晶体学目前是获取目标蛋白质和蛋白质-配体复合物原子分辨率结构信息的最具成效和应用最广泛的方法。通过这种方式获得的知识对于理解蛋白质及其功能的生物学、化学和生物化学至关重要,也有助于开发具有高药理和医学价值的化合物。在这里,我们解决了蛋白质晶体学中非常核心的问题:结晶过程的不可预测性。获得能够高分辨率衍射的蛋白质晶体是通过 X 射线晶体学进行任何结构研究的基本步骤;然而,该方法仍然基本上依赖于反复试验,使其成为一个非常耗时和耗资源的过程。添加剂的使用是一种已建立的方法,可使蛋白质结晶或改善蛋白质结晶,以获得高质量的晶体。因此,需要一种更通用的添加剂来解决更广泛的蛋白质问题,因为这将是蛋白质晶体学的巨大进步,同时也会极大地影响多个研究领域。这反过来又会为整个社会带来整体效益,因为它可以从新型或改进药物的快速发展以及对生物学、生物化学和药理学现象的更深入理解中受益。有鉴于此,我们测试了几种属于新兴多金属氧酸盐(POM)类别的化合物,以评估它们作为结晶添加剂的适用性,并发现碲中心的安德森-埃文斯多钨酸盐 [TeWO](TEW)是最适合的 POM 原型。在首次成功应用作为结晶添加剂后,我们多次报道了 TEW 对蛋白质结晶行为的积极影响,特别关注蛋白质-TEW 相互作用。由于静电相互作用是 TEW 与蛋白质结合的主要力,因此具有高度负电荷的 TEW 原则上可以与所有带有正电荷的蛋白质结合。此外,由于其结构和化学多样性高,TEW 比一些常用的结晶添加剂具有更大的优势。因此,我们总结了 TEW 对蛋白质结晶有益的所有特性,并提出了十个充分的理由来促进 TEW 在蛋白质晶体学中作为一种强大的添加剂的使用。我们的研究结果表明,TEW 是一种在许多方面都非常适合作为结晶添加剂的化合物。我们假设许多晶体学家,尤其是那些不是该领域专家但愿意结晶其结构未知的靶蛋白的研究人员,可以从 TEW 的使用中受益,因为它不仅能够促进结晶过程本身,还能够通过提供有价值的异常信号来促进后续的结构阐明,这有助于相分析步骤。