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硫微螺菌属、氢弧菌属和硫碱微菌属的评价:将硫微螺菌属的四个种分别归入新属硫微菌属和氢弧菌属,以及将硫碱微菌属的四个种全部归入硫微螺菌属。

An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira.

机构信息

Sustainable Earth Institute, University of Plymouth, Drake Circus, Plymouth, UK.

School of Biological & Marine Sciences, University of Plymouth, Drake Circus, Plymouth, UK.

出版信息

Int J Syst Evol Microbiol. 2017 May;67(5):1140-1151. doi: 10.1099/ijsem.0.001855.

Abstract

Thiomicrospira(Tms) species are small sulfur-oxidizing chemolithoautotrophic members of the Gammaproteobacteria. Whilst the type species Tms. pelophila and closely related Tms. thyasirae exhibit canonical spiral morphology under sub-optimal growth conditions, most species are vibrios or rods. The 16S rRNA gene diversity is vast, with identities as low as 91.6 % for Tms. pelophila versus Tms. frisia, for example. Thiomicrospira was examined with closely related genera Hydrogenovibrio and Thioalkalimicrobium and, to rationalize organisms on the basis of the 16S rRNA gene phylogeny, physiology and morphology, we reclassify Tms. kuenenii, Tms. crunogena, Tms. thermophila and Tms. halophila to Hydrogenovibrio kuenenii comb. nov., H. crunogenus corrig. comb. nov., H. thermophilus corrig. comb. nov. and H. halophilus corrig. comb. nov. We reclassify Tms. frisia, Tms. arctica, Tms. psychrophila and Tms. chilensis to Thiomicrorhabdus (Tmr) gen. nov., as Tmr. frisia comb. nov., Tmr. arctica comb. nov., Tmr. psychrophila comb. nov. and Tmr. chilensis comb. nov. - the type species of Thiomicrorhabdus is Tmr. frisia. We demonstrate that Thioalkalimicrobium species fall within the genus Thiomicrospira sensu stricto, thus reclassifying them as Tms. aerophila corrig. comb. nov., Tms. microaerophila corrig. comb. nov., Tms. cyclica corrig. comb. nov. and Tms. sibirica corrig. comb. nov. We provide emended descriptions of the genera Thiomicrospira and Hydrogenovibrio and of Tms. thyasirae.

摘要

硫微菌(Tms)是γ-变形菌门中的小型硫氧化化能自养微生物。虽然模式种 Tms. pelophila 和与其密切相关的 Tms. thyasirae 在亚最佳生长条件下表现出典型的螺旋形态,但大多数物种为弧菌或杆状菌。16S rRNA 基因多样性非常丰富,例如,Tms. pelophila 与 Tms. frisia 的同一性低至 91.6%。硫微菌与密切相关的属 Hydrogenovibrio 和 Thioalkalimicrobium 一起进行了检查,为了根据 16S rRNA 基因系统发育、生理学和形态学将生物体合理化分类,我们将 Tms. kuenenii、Tms. crunogena、Tms. thermophila 和 Tms. halophila 重新分类为 Hydrogenovibrio kuenenii comb. nov.、H. crunogenus corrig. comb. nov.、H. thermophilus corrig. comb. nov. 和 H. halophilus corrig. comb. nov. 我们将 Tms. frisia、Tms. arctica、Tms. psychrophila 和 Tms. chilensis 重新分类为 Thiomicrorhabdus(Tmr)属,作为 Tmr. frisia comb. nov.、Tmr. arctica comb. nov.、Tmr. psychrophila comb. nov. 和 Tmr. chilensis comb. nov.——Thiomicrorhabdus 的模式种。我们证明,Thioalkalimicrobium 物种属于 Thiomicrospira 属,因此将它们重新分类为 Tms. aerophila corrig. comb. nov.、Tms. microaerophila corrig. comb. nov.、Tms. cyclica corrig. comb. nov. 和 Tms. sibirica corrig. comb. nov. 我们提供了对 Thiomicrospira 和 Hydrogenovibrio 属以及 Tms. thyasirae 的修正描述。

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