Boden Rich
School of Biological and Marine Sciences, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK.
Sustainable Earth Institute, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK.
Int J Syst Evol Microbiol. 2017 Oct;67(10):3919-3928. doi: 10.1099/ijsem.0.002222. Epub 2017 Sep 8.
The genus Halothiobacillus contains four species of obligate autotrophs with validly published names, of which Halothiobacillus halophilus and Halothiobacillus hydrothermalis are very distant from the type species - on the basis of the 16S rRNA gene, they have 90.7 % and 90.9 % identity to that of the type species, Halothiobacillus neapolitanus. As these values fall below the Yarza cut-off for the rank of genus, and these two species also show no clear affiliation to the closely related genus Thioalkalibacter, a polyphasic study was undertaken to determine if they represent a separate genus. Unlike Halothiobacillus spp. sensu stricto, H. halophilus and H. hydrothermalis are halophilic (rather than halotolerant) and moderately alkaliphilic (rather than neutrophilic) and additionally do not produce tetrathionate as a detectable intermediate of thiosulfate metabolism, indicating some significant metabolic differences. On the basis of these data and of functional gene examination, it is proposed that they be circumscribed as a new genus Guyparkeria gen.nov, for which the type species is Guyparkeria halophila gen. nov., comb. nov. Additionally, Thioalkalibacter and Guyparkeria gen. nov. fall distant from the Halothiobacillaceae so the Thioalkalibacteraceae fam. nov. is proposed, for which Thioalkalibacter is the type genus. Emended descriptions of Halothiobacillus, Halothiobacillus neapolitanus and the Halothiobacillaceae are provided.
嗜盐硫杆菌属包含四个具有有效发表名称的专性自养菌物种,其中嗜盐嗜盐硫杆菌和热液嗜盐硫杆菌与模式种差异很大——基于16S rRNA基因,它们与模式种那不勒斯嗜盐硫杆菌的序列同一性分别为90.7%和90.9%。由于这些值低于属级的雅尔扎阈值,并且这两个物种与密切相关的硫代碱杆菌属也没有明确的亲缘关系,因此进行了多相研究以确定它们是否代表一个独立的属。与狭义的嗜盐硫杆菌属不同,嗜盐嗜盐硫杆菌和热液嗜盐硫杆菌是嗜盐的(而非耐盐的)和中度嗜碱的(而非中性的),并且此外不会产生连四硫酸盐作为硫代硫酸盐代谢的可检测中间产物,这表明存在一些显著的代谢差异。基于这些数据和功能基因检测,建议将它们划定为一个新属——盖氏菌属(Guyparkeria gen. nov.),其模式种为嗜盐盖氏菌(Guyparkeria halophila gen. nov., comb. nov.)。此外,硫代碱杆菌属和盖氏菌属与嗜盐硫杆菌科差异较大,因此建议设立硫代碱杆菌科(Thioalkalibacteraceae fam. nov.),其中硫代碱杆菌属为模式属。本文还提供了嗜盐硫杆菌属、那不勒斯嗜盐硫杆菌和嗜盐硫杆菌科的修订描述。