Neilson Julia W, Califf Katy, Cardona Cesar, Copeland Audrey, van Treuren Will, Josephson Karen L, Knight Rob, Gilbert Jack A, Quade Jay, Caporaso J Gregory, Maier Raina M
Department of Soil Water and Environmental Science, University of Arizona, Tucson, Arizona, USA.
Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.
mSystems. 2017 May 30;2(3). doi: 10.1128/mSystems.00195-16. eCollection 2017 May-Jun.
Global deserts occupy one-third of the Earth's surface and contribute significantly to organic carbon storage, a process at risk in dryland ecosystems that are highly vulnerable to climate-driven ecosystem degradation. The forces controlling desert ecosystem degradation rates are poorly understood, particularly with respect to the relevance of the arid-soil microbiome. Here we document correlations between increasing aridity and soil bacterial and archaeal microbiome composition along arid to hyperarid transects traversing the Atacama Desert, Chile. A meta-analysis reveals that Atacama soil microbiomes exhibit a gradient in composition, are distinct from a broad cross-section of nondesert soils, and yet are similar to three deserts from different continents. Community richness and diversity were significantly positively correlated with soil relative humidity (SoilRH). Phylogenetic composition was strongly correlated with SoilRH, temperature, and electrical conductivity. The strongest and most significant correlations between SoilRH and phylum relative abundance were observed for , , , , and (Spearman's rank correlation [] = >0.81; false-discovery rate [] = ≤0.005), characterized by 10- to 300-fold decreases in the relative abundance of each taxon. In addition, network analysis revealed a deterioration in the density of significant associations between taxa along the arid to hyperarid gradient, a pattern that may compromise the resilience of hyperarid communities because they lack properties associated with communities that are more integrated. In summary, results suggest that arid-soil microbiome stability is sensitive to aridity as demonstrated by decreased community connectivity associated with the transition from the arid class to the hyperarid class and the significant correlations observed between soilRH and both diversity and the relative abundances of key microbial phyla typically dominant in global soils. We identify key environmental and geochemical factors that shape the arid soil microbiome along aridity and vegetation gradients spanning over 300 km of the Atacama Desert, Chile. Decreasing average soil relative humidity and increasing temperature explain significant reductions in the diversity and connectivity of these desert soil microbial communities and lead to significant reductions in the abundance of key taxa typically associated with fertile soils. This finding is important because it suggests that predicted climate change-driven increases in aridity may compromise the capacity of the arid-soil microbiome to sustain necessary nutrient cycling and carbon sequestration functions as well as vegetative cover in desert ecosystems, which comprise one-third of the terrestrial biomes on Earth.
全球沙漠占据了地球表面的三分之一,对有机碳储存有重要贡献,而在极易受气候驱动的生态系统退化影响的旱地生态系统中,这一过程面临风险。人们对控制沙漠生态系统退化速率的因素了解甚少,尤其是关于干旱土壤微生物群的相关性。在此,我们记录了沿穿越智利阿塔卡马沙漠的干旱至高干旱样带,干旱加剧与土壤细菌和古菌微生物群组成之间的相关性。一项荟萃分析表明,阿塔卡马土壤微生物群在组成上呈现出梯度变化,与多种非沙漠土壤有明显区别,但与来自不同大陆的另外三个沙漠相似。群落丰富度和多样性与土壤相对湿度(SoilRH)显著正相关。系统发育组成与SoilRH、温度和电导率密切相关。在[具体菌门]中观察到SoilRH与菌门相对丰度之间最强且最显著的相关性(斯皮尔曼等级相关性[[]]>0.81;错误发现率[[]]≤0.005),其特征是每个分类单元的相对丰度下降了10至300倍。此外,网络分析显示,沿着干旱至高干旱梯度,分类单元之间显著关联的密度有所下降,这种模式可能会损害高干旱群落的恢复力,因为它们缺乏与更具整合性的群落相关的特性。总之,结果表明,干旱土壤微生物群的稳定性对干旱很敏感,这体现在从干旱等级向高干旱等级转变时群落连通性降低,以及SoilRH与全球土壤中通常占主导地位的关键微生物菌门的多样性和相对丰度之间存在显著相关性。我们确定了塑造智利阿塔卡马沙漠300多公里范围内沿干旱和植被梯度的干旱土壤微生物群的关键环境和地球化学因素。土壤平均相对湿度降低和温度升高导致这些沙漠土壤微生物群落的多样性和连通性显著下降,并导致通常与肥沃土壤相关的关键分类单元的丰度大幅降低。这一发现很重要,因为它表明,预计由气候变化驱动的干旱加剧可能会损害干旱土壤微生物群维持必要的养分循环和碳固存功能以及沙漠生态系统植被覆盖的能力,而沙漠生态系统占地球陆地生物群落的三分之一。