Murugesan Sugeerth, Bouchard Kristofer, Chang Edward, Dougherty Max, Hamann Bernd, Weber Gunther H
Computational Research Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, 94720, CA, USA.
Department of Computer Science, University of California, One Shields Avenue, Davis, 95616, CA, USA.
BMC Bioinformatics. 2017 Jun 6;18(Suppl 6):236. doi: 10.1186/s12859-017-1633-9.
There exists a need for effective and easy-to-use software tools supporting the analysis of complex Electrocorticography (ECoG) data. Understanding how epileptic seizures develop or identifying diagnostic indicators for neurological diseases require the in-depth analysis of neural activity data from ECoG. Such data is multi-scale and is of high spatio-temporal resolution. Comprehensive analysis of this data should be supported by interactive visual analysis methods that allow a scientist to understand functional patterns at varying levels of granularity and comprehend its time-varying behavior.
We introduce a novel multi-scale visual analysis system, ECoG ClusterFlow, for the detailed exploration of ECoG data. Our system detects and visualizes dynamic high-level structures, such as communities, derived from the time-varying connectivity network. The system supports two major views: 1) an overview summarizing the evolution of clusters over time and 2) an electrode view using hierarchical glyph-based design to visualize the propagation of clusters in their spatial, anatomical context. We present case studies that were performed in collaboration with neuroscientists and neurosurgeons using simulated and recorded epileptic seizure data to demonstrate our system's effectiveness.
ECoG ClusterFlow supports the comparison of spatio-temporal patterns for specific time intervals and allows a user to utilize various clustering algorithms. Neuroscientists can identify the site of seizure genesis and its spatial progression during various the stages of a seizure. Our system serves as a fast and powerful means for the generation of preliminary hypotheses that can be used as a basis for subsequent application of rigorous statistical methods, with the ultimate goal being the clinical treatment of epileptogenic zones.
需要有效且易于使用的软件工具来支持对复杂的脑皮层电图(ECoG)数据进行分析。了解癫痫发作的发展过程或识别神经疾病的诊断指标需要对来自ECoG的神经活动数据进行深入分析。此类数据具有多尺度性且具有高时空分辨率。对这些数据的全面分析应由交互式视觉分析方法来支持,这种方法能让科学家理解不同粒度水平上的功能模式并理解其随时间变化的行为。
我们引入了一种新颖的多尺度视觉分析系统ECoG ClusterFlow,用于详细探索ECoG数据。我们的系统能检测并可视化从时变连接网络派生出来的动态高级结构,比如群落。该系统支持两种主要视图:1)一种概述视图,总结聚类随时间的演变;2)一种电极视图,采用基于分层符号的设计来可视化聚类在其空间、解剖学背景下的传播。我们展示了与神经科学家和神经外科医生合作使用模拟和记录的癫痫发作数据进行的案例研究,以证明我们系统的有效性。
ECoG ClusterFlow支持对特定时间间隔的时空模式进行比较,并允许用户使用各种聚类算法。神经科学家可以在癫痫发作的各个阶段识别癫痫发作起源的部位及其空间进展。我们的系统是生成初步假设的快速且强大的手段,这些假设可作为后续应用严格统计方法的基础,最终目标是对癫痫病灶区进行临床治疗。