Schramm Anthony C, Hocky Glen M, Voth Gregory A, Blanchoin Laurent, Martiel Jean-Louis, De La Cruz Enrique M
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut.
Department of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, University of Chicago, Chicago, Illinois.
Biophys J. 2017 Jun 20;112(12):2624-2633. doi: 10.1016/j.bpj.2017.05.016.
Computational and structural studies have been indispensable in investigating the molecular origins of actin filament mechanical properties and modulation by the regulatory severing protein cofilin. All-atom molecular dynamics simulations of cofilactin filament structures determined by electron cryomicroscopy reveal how cofilin enhances the bending and twisting compliance of actin filaments. Continuum mechanics models suggest that buckled cofilactin filaments localize elastic energy at boundaries between bare and cofilin-decorated segments because of their nonuniform elasticity, thereby accelerating filament severing. Here, we develop mesoscopic length-scale (cofil)actin filament models and evaluate the effects of compressive and twisting loads on strain energy distribution at specific interprotein interfaces. The models reliably capture the filament bending and torsional rigidities and intersubunit torsional flexibility measured experimentally with purified protein components. Buckling is predicted to enhance cofilactin filament severing with minimal effects on cofilin occupancy, whereas filament twisting enhances cofilin dissociation without compromising filament integrity. Preferential severing at actin-cofilactin boundaries of buckled filaments is more prominent than predicted by continuum models because of the enhanced spatial resolution. The models developed here will be valuable for evaluating the effects of filament shape deformations on filament stability and interactions with regulatory proteins, and analysis of single filament manipulation assays.
计算和结构研究对于探究肌动蛋白丝力学性质的分子起源以及调节性切断蛋白丝切蛋白对其的调节作用而言不可或缺。通过电子冷冻显微镜确定的丝切肌动蛋白丝结构的全原子分子动力学模拟揭示了丝切蛋白如何增强肌动蛋白丝的弯曲和扭转顺应性。连续介质力学模型表明,弯曲的丝切肌动蛋白丝由于其弹性不均匀,会将弹性能量集中在裸露段和丝切蛋白修饰段之间的边界处,从而加速丝的切断。在此,我们开发了介观长度尺度的(丝切)肌动蛋白丝模型,并评估了压缩和扭转载荷对特定蛋白间界面处应变能分布的影响。这些模型可靠地捕捉了用纯化的蛋白质组分通过实验测量得到的丝的弯曲和扭转刚度以及亚基间的扭转灵活性。预计弯曲会增强丝切肌动蛋白丝的切断,而对丝切蛋白占据率的影响最小,而丝的扭转会增强丝切蛋白的解离,同时不损害丝的完整性。由于空间分辨率提高,弯曲丝的肌动蛋白 - 丝切肌动蛋白边界处的优先切断比连续介质模型预测的更为显著。本文开发的模型对于评估丝形状变形对丝稳定性以及与调节蛋白相互作用的影响,以及分析单丝操纵实验将具有重要价值。