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HTSeq--a Python framework to work with high-throughput sequencing data.HTSeq——一个用于处理高通量测序数据的Python框架。
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A genetic approach to study H2O2 scavenging in fission yeast--distinct roles of peroxiredoxin and catalase.一种研究裂殖酵母中过氧化氢清除的遗传学方法——过氧化物酶和过氧化氢酶的不同作用
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Modification of tRNA(Lys) UUU by elongator is essential for efficient translation of stress mRNAs.延伸因子对 tRNA(Lys)UUU 的修饰对于应激 mRNA 的有效翻译至关重要。
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The transcription factors Pap1 and Prr1 collaborate to activate antioxidant, but not drug tolerance, genes in response to H2O2.转录因子 Pap1 和 Prr1 协同作用,以响应 H2O2 激活抗氧化剂,但不激活耐药物基因。
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Nuclear roles and regulation of chromatin structure by the stress-dependent MAP kinase Sty1 of Schizosaccharomyces pombe.压力依赖型丝裂原活化蛋白激酶 Sty1 对裂殖酵母 Schizosaccharomyces pombe 染色质结构的核作用及调控。
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Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe.Gcn5 促进 Pol II 向前移动,而不是招募到核小体缺失的应激启动子,在裂殖酵母中。
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解析应激反应转录因子Atf1的信号和Sty1激酶依赖性磷酸化在基因激活中的作用。

Deciphering the role of the signal- and Sty1 kinase-dependent phosphorylation of the stress-responsive transcription factor Atf1 on gene activation.

作者信息

Salat-Canela Clàudia, Paulo Esther, Sánchez-Mir Laura, Carmona Mercè, Ayté José, Oliva Baldo, Hidalgo Elena

机构信息

From the Oxidative Stress and Cell Cycle Group and.

Structural Bioinformatics Laboratory (GRIB), Universitat Pompeu Fabra, C/ Dr. Aiguader 88, 08003 Barcelona, Spain.

出版信息

J Biol Chem. 2017 Aug 18;292(33):13635-13644. doi: 10.1074/jbc.M117.794339. Epub 2017 Jun 26.

DOI:10.1074/jbc.M117.794339
PMID:28652406
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5566521/
Abstract

Adaptation to stress triggers the most dramatic shift in gene expression in fission yeast (), and this response is driven by signaling via the MAPK Sty1. Upon activation, Sty1 accumulates in the nucleus and stimulates expression of hundreds of genes via the nuclear transcription factor Atf1, including expression of itself. However, the role of stress-induced, Sty1-mediated Atf1 phosphorylation in transcriptional activation is unclear. To this end, we expressed Atf1 phosphorylation mutants from a constitutive promoter to uncouple Atf1 activity from endogenous, stress-activated Atf1 expression. We found that cells expressing a nonphosphorylatable Atf1 variant are sensitive to oxidative stress because of impaired transcription of a subset of stress genes whose expression is also controlled by another transcription factor, Pap1. Furthermore, cells expressing a phospho-mimicking Atf1 mutant display enhanced stress resistance, and although expression of the Pap1-dependent genes still relied on stress induction, another subset of stress-responsive genes was constitutively expressed in these cells. We also observed that, in cells expressing the phospho-mimicking Atf1 mutant, the presence of Sty1 was completely dispensable, with all stress defects of Sty1-deficient cells being suppressed by expression of the Atf1 mutant. We further demonstrated that Sty1-mediated Atf1 phosphorylation does not stimulate binding of Atf1 to DNA but, rather, establishes a platform of interactions with the basal transcriptional machinery to facilitate transcription initiation. In summary, our results provide evidence that Atf1 phosphorylation by the MAPK Sty1 is required for oxidative stress responses in fission yeast cells by promoting transcription initiation.

摘要

适应压力会引发裂殖酵母中基因表达最显著的变化(),这种反应是由丝裂原活化蛋白激酶Sty1介导的信号传导驱动的。激活后,Sty1在细胞核中积累,并通过核转录因子Atf1刺激数百个基因的表达,包括其自身的表达。然而,应激诱导的、Sty1介导的Atf1磷酸化在转录激活中的作用尚不清楚。为此,我们从组成型启动子表达Atf1磷酸化突变体,以使Atf1活性与内源性应激激活的Atf1表达脱钩。我们发现,表达不可磷酸化Atf1变体的细胞对氧化应激敏感,因为一组应激基因的转录受损,这些基因的表达也受另一个转录因子Pap1的控制。此外,表达磷酸化模拟Atf1突变体的细胞表现出增强的应激抗性,尽管Pap1依赖性基因的表达仍依赖于应激诱导,但另一组应激反应基因在这些细胞中组成性表达。我们还观察到,在表达磷酸化模拟Atf1突变体的细胞中,Sty1的存在是完全不必要的,Atf1突变体的表达抑制了Sty1缺陷细胞的所有应激缺陷。我们进一步证明,Sty1介导的Atf1磷酸化不会刺激Atf1与DNA的结合,而是建立一个与基础转录机制相互作用的平台,以促进转录起始。总之,我们的结果提供了证据,表明丝裂原活化蛋白激酶Sty1介导的Atf1磷酸化通过促进转录起始,是裂殖酵母细胞氧化应激反应所必需的。