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叶形目三种单节绦虫的完整线粒体DNA:真绦虫系统发育的线粒体基因组视角

The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes.

作者信息

Li Wen X, Zhang Dong, Boyce Kellyanne, Xi Bing W, Zou Hong, Wu Shan G, Li Ming, Wang Gui T

机构信息

Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.

University of Chinese Academy of Sciences, Beijing, 100049, China.

出版信息

Parasit Vectors. 2017 Jun 27;10(1):314. doi: 10.1186/s13071-017-2245-y.

Abstract

BACKGROUND

External segmentation and internal proglottization are important evolutionary characters of the Eucestoda. The monozoic caryophyllideans are considered the earliest diverging eucestodes based on partial mitochondrial genes and nuclear rDNA sequences, yet, there are currently no complete mitogenomes available. We have therefore sequenced the complete mitogenomes of three caryophyllideans, as well as the polyzoic Schyzocotyle acheilognathi, explored the phylogenetic relationships of eucestodes and compared the gene arrangements between unsegmented and segmented cestodes.

RESULTS

The circular mitogenome of Atractolytocestus huronensis was 15,130 bp, the longest sequence of all the available cestodes, 14,620 bp for Khawia sinensis, 14,011 bp for Breviscolex orientalis and 14,046 bp for Schyzocotyle acheilognathi. The A-T content of the three caryophyllideans was found to be lower than any other published mitogenome. Highly repetitive regions were detected among the non-coding regions (NCRs) of the four cestode species. The evolutionary relationship determined between the five orders (Caryophyllidea, Diphyllobothriidea, Bothriocephalidea, Proteocephalidea and Cyclophyllidea) is consistent with that expected from morphology and the large fragments of mtDNA when reconstructed using all 36 genes. Examination of the 54 mitogenomes from these five orders, revealed a unique arrangement for each order except for the Cyclophyllidea which had two types that were identical to that of the Diphyllobothriidea and the Proteocephalidea. When comparing gene order between the unsegmented and segmented cestodes, the segmented cestodes were found to have the lower similarities due to a long distance transposition event. All rearrangement events between the four arrangement categories took place at the junction of rrnS-tRNA (P1) where NCRs are common.

CONCLUSIONS

Highly repetitive regions are detected among NCRs of the four cestode species. A long distance transposition event is inferred between the unsegmented and segmented cestodes. Gene arrangements of Taeniidae and the rest of the families in the Cyclophyllidea are found be identical to those of the sister order Proteocephalidea and the relatively basal order Diphyllobothriidea, respectively.

摘要

背景

外部节片化和内部节片形成是真绦虫重要的进化特征。基于部分线粒体基因和核核糖体DNA序列,单节叶形绦虫被认为是最早分化的真绦虫,然而,目前尚无完整的线粒体基因组。因此,我们对三种叶形绦虫以及多节的中华许氏绦虫的完整线粒体基因组进行了测序,探讨了真绦虫的系统发育关系,并比较了不分节绦虫和分节绦虫之间的基因排列。

结果

休伦湖阿托裂头绦虫的环状线粒体基因组为15,130 bp,是所有已获得的绦虫中最长的序列,中华卡维绦虫为14,620 bp,东方短膜壳绦虫为14,011 bp,中华许氏绦虫为14,046 bp。发现三种叶形绦虫的A-T含量低于其他已发表的线粒体基因组。在四种绦虫物种的非编码区(NCRs)中检测到高度重复区域。使用所有36个基因重建时,五个目(叶形目、双叶槽目、头槽目、原头节目和圆叶目)之间确定的进化关系与形态学和线粒体DNA大片段预期的一致。对这五个目的54个线粒体基因组进行检查,发现除圆叶目有两种与双叶槽目和原头节目相同的类型外,每个目都有独特的排列。在比较不分节绦虫和分节绦虫之间的基因顺序时,发现分节绦虫由于长距离转座事件而具有较低的相似性。四种排列类别之间的所有重排事件都发生在rrnS-tRNA(P1)的连接处,此处NCRs常见。

结论

在四种绦虫物种的NCRs中检测到高度重复区域。推断在不分节绦虫和分节绦虫之间发生了长距离转座事件。发现带科和圆叶目中其他科的基因排列分别与姐妹目原头节目和相对基部的双叶槽目的基因排列相同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bbe/5488446/86093aebd76c/13071_2017_2245_Fig1_HTML.jpg

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