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放射基因组学与放射治疗反应建模

Radiogenomics and radiotherapy response modeling.

作者信息

El Naqa Issam, Kerns Sarah L, Coates James, Luo Yi, Speers Corey, West Catharine M L, Rosenstein Barry S, Ten Haken Randall K

机构信息

Department of Radiation Oncology, University of Michigan, Ann Arbor, MI, United States of America.

出版信息

Phys Med Biol. 2017 Aug 1;62(16):R179-R206. doi: 10.1088/1361-6560/aa7c55.

DOI:10.1088/1361-6560/aa7c55
PMID:28657906
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5557376/
Abstract

Advances in patient-specific information and biotechnology have contributed to a new era of computational medicine. Radiogenomics has emerged as a new field that investigates the role of genetics in treatment response to radiation therapy. Radiation oncology is currently attempting to embrace these recent advances and add to its rich history by maintaining its prominent role as a quantitative leader in oncologic response modeling. Here, we provide an overview of radiogenomics starting with genotyping, data aggregation, and application of different modeling approaches based on modifying traditional radiobiological methods or application of advanced machine learning techniques. We highlight the current status and potential for this new field to reshape the landscape of outcome modeling in radiotherapy and drive future advances in computational oncology.

摘要

患者特异性信息和生物技术的进步推动了计算医学的新时代。放射基因组学已成为一个新领域,研究遗传学在放射治疗反应中的作用。放射肿瘤学目前正试图接受这些最新进展,并通过在肿瘤反应建模中保持其作为定量领导者的突出地位,为其丰富的历史增添光彩。在此,我们概述放射基因组学,首先介绍基因分型、数据汇总,以及基于修改传统放射生物学方法或应用先进机器学习技术的不同建模方法的应用。我们强调了这一新领域在重塑放射治疗结果建模格局和推动计算肿瘤学未来进展方面的现状和潜力。

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Radiogenomics and radiotherapy response modeling.放射基因组学与放射治疗反应建模
Phys Med Biol. 2017 Aug 1;62(16):R179-R206. doi: 10.1088/1361-6560/aa7c55.
2
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本文引用的文献

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A Gene Signature for Selecting Benefit from Hypoxia Modification of Radiotherapy for High-Risk Bladder Cancer Patients.一种用于选择高危膀胱癌患者放疗缺氧修饰获益的基因特征。
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Unraveling biophysical interactions of radiation pneumonitis in non-small-cell lung cancer via Bayesian network analysis.通过贝叶斯网络分析揭示非小细胞肺癌放射性肺炎的生物物理相互作用
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Development and validation of a 24-gene predictor of response to postoperative radiotherapy in prostate cancer: a matched, retrospective analysis.开发和验证一种 24 基因预测因子,用于预测前列腺癌术后放疗的反应:一项匹配、回顾性分析。
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Phys Med. 2016 Oct;32(10):1187-1200. doi: 10.1016/j.ejmp.2016.09.007. Epub 2016 Sep 19.
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Radiation track, DNA damage and response-a review.辐射轨迹、DNA 损伤与响应——综述
Rep Prog Phys. 2016 Nov;79(11):116601. doi: 10.1088/0034-4885/79/11/116601. Epub 2016 Sep 21.
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Perspectives on making big data analytics work for oncology.关于使大数据分析在肿瘤学中发挥作用的观点。
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Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.全基因组关联研究的荟萃分析确定了前列腺癌放疗后迟发性毒性的遗传标记。
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Individual patient data meta-analysis shows a significant association between the ATM rs1801516 SNP and toxicity after radiotherapy in 5456 breast and prostate cancer patients.对5456例乳腺癌和前列腺癌患者的个体患者数据进行的荟萃分析表明,ATM基因rs1801516单核苷酸多态性与放疗后的毒性之间存在显著关联。
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