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肠致病性大肠杆菌 B171 中发现的一种大抗生素抗性质粒的特性及其与不同大肠杆菌和志贺氏菌菌株质粒的相关性。

Characterization of a Large Antibiotic Resistance Plasmid Found in Enteropathogenic Escherichia coli Strain B171 and Its Relatedness to Plasmids of Diverse E. coli and Shigella Strains.

机构信息

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA.

出版信息

Antimicrob Agents Chemother. 2017 Aug 24;61(9). doi: 10.1128/AAC.00995-17. Print 2017 Sep.

Abstract

Enteropathogenic (EPEC) is a leading cause of severe infantile diarrhea in developing countries. Previous research has focused on the diversity of the EPEC virulence plasmid, whereas less is known regarding the genetic content and distribution of antibiotic resistance plasmids carried by EPEC. A previous study demonstrated that in addition to the virulence plasmid, reference EPEC strain B171 harbors a second, larger plasmid that confers antibiotic resistance. To further understand the genetic diversity and dissemination of antibiotic resistance plasmids among EPEC strains, we describe the complete sequence of an antibiotic resistance plasmid from EPEC strain B171. The resistance plasmid, pB171_90, has a completed sequence length of 90,229 bp, a GC content of 54.55%, and carries protein-encoding genes involved in conjugative transfer, resistance to tetracycline (), sulfonamides (), and mercury, as well as several virulence-associated genes, including the transcriptional regulator and the putative calcium sequestration inhibitor (). detection of the pB171_90 genes among 4,798 publicly available genome assemblies indicates that the unique genes of pB171_90 ( and ) are primarily restricted to genomes identified as EPEC or enterotoxigenic However, conserved regions of the pB171_90 plasmid containing genes involved in replication, stability, and antibiotic resistance were identified among diverse pathotypes. Interestingly, pB171_90 also exhibited significant similarity with a sequenced plasmid from type I. Our findings demonstrate the mosaic nature of EPEC antibiotic resistance plasmids and highlight the need for additional sequence-based characterization of antibiotic resistance plasmids harbored by pathogenic .

摘要

肠致病性 (EPEC)是发展中国家严重婴儿腹泻的主要原因。先前的研究主要集中在 EPEC 毒力质粒的多样性上,而对于 EPEC 携带的抗生素抗性质粒的遗传内容和分布知之甚少。先前的一项研究表明,除了毒力质粒外,参考 EPEC 菌株 B171 还携带第二个更大的质粒,该质粒赋予抗生素抗性。为了进一步了解 EPEC 菌株中抗生素抗性质粒的遗传多样性和传播,我们描述了来自 EPEC 菌株 B171 的抗生素抗性质粒的完整序列。抗性质粒 pB171_90 的完整序列长度为 90229 bp,GC 含量为 54.55%,并携带参与共轭转移的蛋白质编码基因、对四环素()、磺胺类药物()和汞的抗性,以及几个与毒力相关的基因,包括转录调节因子 和假定的钙螯合抑制剂()。在 4798 个公开可用的 基因组组装中检测到 pB171_90 基因表明,pB171_90 的独特基因(和)主要局限于被鉴定为 EPEC 或肠毒性 的基因组。然而,在不同的 血清型中发现了包含复制、稳定性和抗生素抗性相关基因的 pB171_90 质粒的保守区。有趣的是,pB171_90 还与来自 型 I 的测序质粒表现出显著的相似性。我们的研究结果表明,EPEC 抗生素抗性质粒具有镶嵌性质,并强调需要对致病性 中携带的抗生素抗性质粒进行更多基于序列的特征描述。

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