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临床和微生物学特征的患者菌血症引起的弯曲菌种,重点是亚种的胎儿弯曲菌。

Clinical and microbiological characteristics of patients with bacteremia caused by Campylobacter species with an emphasis on the subspecies of C. fetus.

机构信息

Graduate Institute of Clinical Medicine, National Taiwan University College of Medicine, Taipei, Taiwan; Department of Internal Medicine, Cardinal Tien Hospital, Taipei, Taiwan.

Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, Miyazaki, Japan.

出版信息

J Microbiol Immunol Infect. 2019 Feb;52(1):122-131. doi: 10.1016/j.jmii.2017.07.009. Epub 2017 Jul 25.

Abstract

OBJECTIVES

This study was intended to investigate the clinical and microbiological characteristics of patients with bacteremia caused by Campylobacter species.

METHODS

From April 1998 to May 2014, 56 adults with bacteremia caused by Campylobacter species were evaluated. These Campylobacter species isolates were confirmed to the species level using 16S rRNA gene sequencing (all isolates) and multiplex PCR analysis (for C. fetus only). The performance of identification for Campylobacter species by the Bruker Biotyper MALDI-TOF MS was evaluated. The genetic relatedness of C. fetus isolates was analyzed by multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE).

RESULTS

The leading underlying medical conditions of these patients were malignancy (46.4%), hypertension (35.7%), and liver cirrhosis (23.2%). The overall 30-day mortality rate was 5.4%. Using 16S rRNA sequencing analysis, 26 isolates of C. coli, 11 of C. jejuni, and 19 of C. fetus, including 15 C. fetus subsp. fetus and five C. fetus subsp. venerealis, were identified. Among the five C. fetus subsp. venerealis isolates recognized by 16S rRNA gene sequencing, only two isolates were C. fetus subsp. venerealis by multiplex PCR method. The Bruker Biotyper MALDI-TOF MS failed to correctly identify C. fetus subsp. venerealis isolates. MLST analysis of C. fetus isolates revealed three STs: ST20 (n = 12), ST11 (n = 5), and ST57 (n = 2), which were compatible with three major PFGE clusters.

CONCLUSION

Database expansion of MALDI-TOF MS for the correct identification of C. fetus to subspecies levels is needed. A novel clone of ST57-PFGE Cluster C of C. fetus subsp. venerealis was noted.

摘要

目的

本研究旨在调查弯曲菌属引起的菌血症患者的临床和微生物学特征。

方法

1998 年 4 月至 2014 年 5 月,评估了 56 例由弯曲菌属引起的菌血症成人患者。所有分离株均通过 16S rRNA 基因测序(所有分离株)和多重 PCR 分析(仅针对胎儿弯曲菌)确认为种水平。评估了 Bruker Biotyper MALDI-TOF MS 对弯曲菌属的鉴定性能。通过多位点序列分型(MLST)和脉冲场凝胶电泳(PFGE)分析胎儿弯曲菌分离株的遗传相关性。

结果

这些患者的主要基础疾病为恶性肿瘤(46.4%)、高血压(35.7%)和肝硬化(23.2%)。总的 30 天死亡率为 5.4%。通过 16S rRNA 测序分析,鉴定出 26 株 C. coli、11 株 C. jejuni 和 19 株 C. fetus,包括 15 株 C. fetus subsp. fetus 和 5 株 C. fetus subsp. venerealis。在通过 16S rRNA 基因测序鉴定的 5 株 C. fetus subsp. venerealis 分离株中,只有 2 株分离株通过多重 PCR 方法鉴定为 C. fetus subsp. venerealis。Bruker Biotyper MALDI-TOF MS 无法正确鉴定 C. fetus subsp. venerealis 分离株。C. fetus 分离株的 MLST 分析显示了 3 种 ST:ST20(n=12)、ST11(n=5)和 ST57(n=2),与 3 个主要 PFGE 簇相匹配。

结论

需要扩展 MALDI-TOF MS 数据库,以正确鉴定 C. fetus 亚种水平。注意到 C. fetus subsp. venerealis 的 ST57-PFGE 簇 C 的新型克隆。

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