Liu Xinliang, Yu Wanwen, Zhang Xuhui, Wang Guibin, Cao Fuliang, Cheng Hua
Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037 China.
Jiangxi Academy of Forestry, Nanchang, 330032 China.
Physiol Mol Biol Plants. 2017 Jul;23(3):503-516. doi: 10.1007/s12298-017-0436-9. Epub 2017 Mar 31.
The R2R3-MYB gene family is the largest MYB subfamily in plants and is involved in the regulation of plant secondary metabolism and specific morphogenesis, as well as the response to biotic and abiotic stress. However, a systematic identification and characterization of this gene family has not been carried out in . In this study, we performed a transcriptome-wide survey from four tissues of to determine the genetic variation and expression pattern of the - genes. We analyzed 45 and identified 42 with a complete coding sequence via conserved motif searches. The MYB domain and other motifs in are highly conserved with AtMYBs. Phylogenetic analysis of the GbMYBs and AtMYBs categorized the R2R3-MYBs into 26 subgroups, of which 11 subgroups included proteins from both and , and 1 subgroup was specific to . Moreover, the expression patterns were analyzed in different tissues and abiotic stress conditions. The results revealed that were differentially expressed in various tissues and following abiotic stresses and phytohormone treatments, indicating their possible roles in biological processes and abiotic stress tolerance and adaptation. Our study demonstrated the functional diversity of the and will provide a foundation for future research into their biological and molecular functions.
R2R3-MYB基因家族是植物中最大的MYB亚家族,参与植物次生代谢调控、特定形态发生以及对生物和非生物胁迫的响应。然而,尚未在[具体物种]中对该基因家族进行系统的鉴定和表征。在本研究中,我们对[具体物种]四个组织进行了全转录组调查,以确定[具体物种]R2R3-MYB基因的遗传变异和表达模式。我们分析了45个[具体物种]R2R3-MYB基因,并通过保守基序搜索鉴定出42个具有完整编码序列的基因。[具体物种]R2R3-MYB基因的MYB结构域和其他基序与拟南芥AtMYB基因高度保守。对[具体物种]GbMYB基因和拟南芥AtMYB基因进行系统发育分析,将R2R3-MYBs分为26个亚组,其中11个亚组包含来自[具体物种]和拟南芥的蛋白,1个亚组是[具体物种]特有的。此外,分析了[具体物种]R2R3-MYB基因在不同组织和非生物胁迫条件下的表达模式。结果表明,[具体物种]R2R3-MYB基因在不同组织以及非生物胁迫和植物激素处理后差异表达,表明它们在生物学过程以及非生物胁迫耐受性和适应性中可能发挥的作用。我们的研究证明了[具体物种]R2R3-MYB基因的功能多样性,并将为其生物学和分子功能的未来研究提供基础。