Li Yanjun, Wang Guixin, Xu Zeqian, Li Jing, Sun Mengwei, Guo Jingsong, Ji Wei
Department of Biotechnology, College of Life Science, Northeast Agricultural UniversityHarbin, China.
Front Plant Sci. 2017 Aug 21;8:1458. doi: 10.3389/fpls.2017.01458. eCollection 2017.
Covalent attachment of the small ubiquitin-related modifier, SUMO, to substrate proteins plays a significant role in plants under stress conditions, which can alter target proteins' function, location, and protein-protein interactions. Despite this importance, information about SUMOylation in the major legume crop, soybean, remains obscure. In this study, we performed a bioinformatics analysis of the entire soybean genome and identified 40 genes belonged to six families involved in a cascade of enzymatic reactions in soybean SUMOylation system. The -acting elements analysis revealed that promoters of SUMO pathway genes contained different combinations of stress and development-related -regulatory elements. RNA-seq data analysis showed that SUMO pathway components exhibited versatile tissue-specific expression patterns, indicating coordinated functioning during plant growth and development. qRT-PCR analysis of 13 SUMO pathway members indicated that majority of the SUMO pathway members were transcriptionally up-regulated by NaCl, heat and ABA stimuli during the 24 h period of treatment. Furthermore, SUMOylation dynamics in soybean roots under abiotic stress treatment were analyzed by western blot, which were characterized by regulation of SUMOylated proteins. Collectively, this study defined the organization of the soybean SUMOylation system and implied an essential function for SUMOylation in soybean abiotic stress responses.
小泛素相关修饰物SUMO与底物蛋白的共价连接在胁迫条件下的植物中发挥着重要作用,它可以改变靶蛋白的功能、定位以及蛋白质-蛋白质相互作用。尽管具有这种重要性,但关于主要豆科作物大豆中的SUMO化信息仍然不清楚。在本研究中,我们对整个大豆基因组进行了生物信息学分析,鉴定出40个属于六个家族的基因,这些基因参与大豆SUMO化系统中的一系列酶促反应。顺式作用元件分析表明,SUMO途径基因的启动子包含与胁迫和发育相关的不同组合的顺式调控元件。RNA-seq数据分析表明,SUMO途径组分表现出多样的组织特异性表达模式,表明在植物生长发育过程中发挥协同作用。对13个SUMO途径成员的qRT-PCR分析表明,在处理的24小时内,大多数SUMO途径成员在转录水平上受到NaCl、热和ABA刺激的上调。此外,通过蛋白质免疫印迹分析了非生物胁迫处理下大豆根中的SUMO化动态,其特征是对SUMO化蛋白的调控。总的来说,本研究确定了大豆SUMO化系统结构,并暗示了SUMO化在大豆非生物胁迫响应中的重要功能。