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CRISPR/Cas9:枣椰树基因组编辑的实用方法

CRISPR/Cas9: A Practical Approach in Date Palm Genome Editing.

作者信息

Sattar Muhammad N, Iqbal Zafar, Tahir Muhammad N, Shahid Muhammad S, Khurshid Muhammad, Al-Khateeb Abdullatif A, Al-Khateeb Suliman A

机构信息

Department of Environment and Natural Resources, Faculty of Agriculture and Food Sciences, King Faisal UniversityAl-Ahsa, Saudi Arabia.

Akhuwat-Faisalabad Institute of Research, Science and TechnologyFaisalabad, Pakistan.

出版信息

Front Plant Sci. 2017 Aug 23;8:1469. doi: 10.3389/fpls.2017.01469. eCollection 2017.

Abstract

The genetic modifications through breeding of crop plants have long been used to improve the yield and quality. However, precise genome editing (GE) could be a very useful supplementary tool for improvement of crop plants by targeted genome modifications. Various GE techniques including ZFNs (zinc finger nucleases), TALENs (transcription activator-like effector nucleases), and most recently clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 (CRISPR-associated protein 9)-based approaches have been successfully employed for various crop plants including fruit trees. CRISPR/Cas9-based approaches hold great potential in GE due to their simplicity, competency, and versatility over other GE techniques. However, to the best of our knowledge no such genetic improvement has ever been developed in date palm-an important fruit crop in Oasis agriculture. The applications of CRISPR/Cas9 can be a challenging task in date palm GE due to its large and complex genome, high rate of heterozygosity and outcrossing, regeneration and screening of mutants, high frequency of single-nucleotide polymorphism in the genome and ultimately genetic instability. In this review, we addressed the potential application of CRISPR/Cas9-based approaches in date palm GE to improve the sustainable date palm production. The availability of the date palm whole genome sequence has made it feasible to use CRISPR/Cas9 GE approach for genetic improvement in this species. Moreover, the future prospects of GE application in date palm are also addressed in this review.

摘要

长期以来,通过培育对作物进行基因改造一直被用于提高产量和品质。然而,精确基因组编辑(GE)可能是一种非常有用的辅助工具,可通过靶向基因组改造来改良作物。包括锌指核酸酶(ZFNs)、转录激活样效应物核酸酶(TALENs)以及最近基于成簇规律间隔短回文重复序列(CRISPR)/Cas9(CRISPR相关蛋白9)的方法在内的各种GE技术已成功应用于包括果树在内的多种作物。基于CRISPR/Cas9的方法在GE中具有巨大潜力,因为它们比其他GE技术更简单、更有效且更具通用性。然而,据我们所知,在枣椰树(绿洲农业中的一种重要水果作物)中尚未开发出这样的基因改良方法。由于枣椰树基因组庞大且复杂、杂合度和异交率高、突变体的再生和筛选、基因组中单核苷酸多态性频率高以及最终的遗传不稳定性,CRISPR/Cas9的应用在枣椰树GE中可能是一项具有挑战性的任务。在本综述中,我们探讨了基于CRISPR/Cas9的方法在枣椰树GE中的潜在应用,以提高枣椰树的可持续产量。枣椰树全基因组序列的可用性使得使用CRISPR/Cas9 GE方法对该物种进行基因改良成为可能。此外,本综述还讨论了GE在枣椰树中的应用前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c893/5572371/bbf8eb5793fb/fpls-08-01469-g001.jpg

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