Boden Rich, Scott Kathleen M
Sustainable Earth Institute, University of Plymouth, Plymouth, UK.
School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK.
Int J Syst Evol Microbiol. 2018 Jul;68(7):2226-2239. doi: 10.1099/ijsem.0.002816. Epub 2018 May 31.
Thiothrix is the type genus of the Thiotrichaceae in the Thiotrichales of the Gammaproteobacteria, comprising nine species of sulfur-oxidising filamentous bacteria, which are variously autotrophic, heterotrophic or have mixed metabolic modes. Within the genus, four species show 16S rRNA gene identities lower the Yarza threshold for the rank of genus (94.5 %) - Thiothrix disciformis, Thiothrix flexilis, Thiothrix defluvii and Thiothrix eikelboomii - as they show no affiliation to extant genera, a polyphasic study was undertaken including biochemical, physiological and genomic properties and phylogeny based on the 16S rRNA gene (rrs), recombination protein A (RecA), polynucleotide nucleotidyltransferase (Pnp), translation initiation factor IF-2 (InfB), glyceraldehyde-3-phosphate dehydrogenase (GapA), glutaminyl-tRNA synthetase (GlnS), elongation factor EF-G (FusA) and concatamers of 53 ribosomal proteins encoded by rps, rpl and rpm operons, all of which support the reclassification of these species. We thus propose Thiolinea gen. nov. and Thiofilum gen. nov. for which the type species are Thiolinea disciformis gen. nov., comb. nov. and Thiofilum flexile gen. nov., comb. nov. We also propose that these genera are each circumscribed into novel families Thiolinaceae fam. nov. and Thiofilaceae fam. nov., and that Leucothrix and Cocleimonas are circumscribed into Leucotrichaceaefam. nov. and provide emended descriptions of Thiothrix and Thiotrichaceae.
硫丝菌属是γ-变形菌纲硫丝菌目中硫丝菌科的模式属,包含9种硫氧化丝状细菌,它们分别为自养型、异养型或具有混合代谢模式。在该属中,有4个物种的16S rRNA基因序列相似度低于亚尔扎属级阈值(94.5%)——盘状硫丝菌、弯曲硫丝菌、污水硫丝菌和艾氏硫丝菌,由于它们与现有属均无关联,因此开展了一项多相研究,包括生化、生理和基因组特性以及基于16S rRNA基因(rrs)、重组蛋白A(RecA)、多核苷酸核苷酸转移酶(Pnp)、翻译起始因子IF-2(InfB)、甘油醛-3-磷酸脱氢酶(GapA)、谷氨酰胺-tRNA合成酶(GlnS)、延伸因子EF-G(FusA)以及由rps、rpl和rpm操纵子编码的53种核糖体蛋白的串联体的系统发育分析,所有这些都支持对这些物种进行重新分类。因此,我们提议建立新属硫线菌属(Thiolinea gen. nov.)和硫丝菌属(Thiofilum gen. nov.),其模式种分别为新组合的盘状硫线菌(Thiolinea disciformis gen. nov., comb. nov.)和新组合的弯曲硫丝菌(Thiofilum flexile gen. nov., comb. nov.)。我们还提议将这些属分别归入新的硫线菌科(Thiolinaceae fam. nov.)和硫丝菌科(Thiofilaceae fam. nov.),并将亮发菌属(Leucothrix)和鞘单胞菌属(Cocleimonas)归入新的亮发菌科(Leucotrichaceae fam. nov.),同时提供硫丝菌属和硫丝菌科的修订描述。