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为量子力学应用量身定制的经典力场:这真的是一种可行的策略吗?

Classical Force Fields Tailored for QM Applications: Is It Really a Feasible Strategy?

作者信息

Andreussi Oliviero, Prandi Ingrid G, Campetella Marco, Prampolini Giacomo, Mennucci Benedetta

机构信息

Institute of Computational Science, Università della Svizzera Italiana , Via Giuseppe Buffi 13, CH-6904 Lugano, Switzerland.

Theory and Simulations of Materials (THEOS) and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne , Station 12, CH-1015 Lausanne, Switzerland.

出版信息

J Chem Theory Comput. 2017 Oct 10;13(10):4636-4648. doi: 10.1021/acs.jctc.7b00777. Epub 2017 Sep 29.

Abstract

Classical molecular dynamics is more and more often coupled to quantum mechanical based techniques as a statistical tool to sample configurations of molecular systems embedded in complex environments. Nonetheless, the classical potentials describing the molecular systems are seldom parametrized to reproduce electronic processes, such as electronic excitations, which are instead very sensitive to the underlining description of the molecular structure. Here, we analyze the challenging case of the peridinin molecule, a natural apocarotenoid responsible for the light-harvesting process in the PCP antenna protein of dinoflagellates. Ground-state structural and vibrational properties, as well as electronic transitions of the pigment are studied by means of quantum-mechanical static and dynamic calculations. Thereafter, classical molecular dynamics simulations are performed with a number of different force-fields, ranging from a popular, general purpose one to refined potentials of increasing level of complexity. From the comparison of classical results with their quantum mechanical counterparts, it appears that, while very poor results are obtained from standard transferrable force-fields, specifically tuned potentials are able to correctly characterize most of the structural and vibrational features of the pigment. Nonetheless, only an advanced parametrization technique is able to give a semiquantitative description of the coupling between vibrations and electronic excitations, thus suggesting that the use of classical MD in combination of QM calculations for the study of photoinduced processes, albeit possible, should be considered with care.

摘要

经典分子动力学越来越多地与基于量子力学的技术相结合,作为一种统计工具,用于对嵌入复杂环境中的分子系统的构型进行采样。尽管如此,描述分子系统的经典势很少针对再现电子过程(如电子激发)进行参数化,而电子激发对分子结构的基础描述非常敏感。在这里,我们分析了多甲藻素分子这一具有挑战性的案例,它是一种天然的类胡萝卜素,负责甲藻PCP天线蛋白中的光捕获过程。通过量子力学的静态和动态计算研究了该色素的基态结构和振动性质以及电子跃迁。此后,使用多种不同的力场进行经典分子动力学模拟,从一种流行的通用力场到复杂度不断增加的精细势。通过将经典结果与其量子力学对应结果进行比较,似乎虽然从标准可转移力场得到的结果非常差,但经过专门调整的势能够正确地表征该色素的大多数结构和振动特征。尽管如此,只有一种先进的参数化技术能够对振动与电子激发之间的耦合进行半定量描述,因此表明在研究光诱导过程时,将经典分子动力学与量子力学计算结合使用虽然可行,但应谨慎考虑。

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