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荨麻长孢菌新种,从欧荨麻根际土壤中分离得到,以及白色长孢菌和黄色长孢菌的修订描述。

Longispora urticae sp. nov., isolated from rhizosphere soil of Urtica urens L., and emended descriptions of the species Longisporaalbida and Longisporafulva.

作者信息

Piao Chenyu, Jin Liying, Zhao Junwei, Liu Chongxi, Zhao Yue, Wang Xiangjing, Xiang Wensheng

机构信息

Key Laboratory of Agriculture Biological Functional Gene of Heilongjiang Provincial Education Committee, Northeast Agricultural University, 59 Mucai Street, Xiangfang District, Harbin 150030, PR China.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Oct;67(10):4228-4234. doi: 10.1099/ijsem.0.002288. Epub 2017 Sep 18.

Abstract

Two Gram-stain-positive, aerobic actinomycete strains, designated NEAU-PCY-3 and NEAU-PCY-4, were isolated from rhizosphere soil of Urtica urens L. collected from Anshan, Liaoning Province, northeast PR China. The 16S rRNA gene sequence analysis showed that the two strains exhibited 99.9 % 16S rRNA gene sequence similarity with each other and that they were most closely to Longispora fulva DSM 45356 (98.7, 98.9 %) and Longispora albida JCM 11711 (97.1, 97.2 %). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the two strains were located in the same lineage and formed a cluster with the genus Longispora. Both strains were observed to contain MK-10(H4) and MK-10(H6) as the predominant menaquinones. The cell wall peptidoglycan was found to contain meso-diaminopimelic acid, d-glutamic acid, glycine and l-alanine. Whole-cell hydrolysates mainly contained galactose, ribose and xylose. The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, several glycolipids and several unknown lipids. The major cellular fatty acids for strain NEAU-PCY-3 were iso-C16 : 0, iso-C17 : 0, anteiso-C17 : 0 and C18 : 1ω5c. The DNA-DNA hybridization value between strains NEAU-PCY-3 and NEAU-PCY-4 was 83.6±0.4 %, and the values between the two strains and their closest phylogenetic relatives, belonging to the genus Longispora, were well below 70 %, supporting that they represented a distinct genomic species. An array of phenotypic characteristics also differentiated the strains from their closely related species, the only two validly published Longispora species. On the basis of the genetic, chemotaxonomic and phenotypic properties, strains NEAU-PCY-3 and NEAU-PCY-4 were classified as representatives of a novel species of the genus Longispora, for which the name Longispora urticae sp. nov. is proposed. The type strain is NEAU-PCY-3 (=DSM 105119=CCTCC AA 2017017).

摘要

从中国东北辽宁省鞍山市收集的荨麻根际土壤中分离出两株革兰氏阳性需氧放线菌,分别命名为NEAU-PCY-3和NEAU-PCY-4。16S rRNA基因序列分析表明,这两株菌彼此之间的16S rRNA基因序列相似性为99.9%,并且它们与黄褐长孢囊菌DSM 45356(相似性分别为98.7%、98.9%)和白色长孢囊菌JCM 11711(相似性分别为97.1%、97.2%)最为接近。基于16S rRNA基因序列的系统发育分析表明,这两株菌位于同一分支,并与长孢囊菌属形成一个簇。观察到两株菌均以MK-10(H4)和MK-10(H6)作为主要的甲基萘醌。发现细胞壁肽聚糖含有内消旋二氨基庚二酸、d-谷氨酸、甘氨酸和l-丙氨酸。全细胞水解产物主要含有半乳糖、核糖和木糖。磷脂图谱包含双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇、几种糖脂和几种未知脂质。菌株NEAU-PCY-3的主要细胞脂肪酸为异-C16 : 0、异-C17 : 0、anteiso-C17 : 0和C18 : 1ω5c。菌株NEAU-PCY-3和NEAU-PCY-4之间的DNA-DNA杂交值为83.6±0.4%,这两株菌与其最接近的系统发育亲缘种(属于长孢囊菌属)之间的杂交值远低于70%,支持它们代表一个独特的基因组物种。一系列表型特征也使这些菌株与其密切相关的物种(仅有的两个有效发表的长孢囊菌物种)区分开来。基于遗传、化学分类和表型特征,菌株NEAU-PCY-3和NEAU-PCY-4被归类为长孢囊菌属一个新物种的代表,为此提出新名称荨麻长孢囊菌(Longispora urticae sp. nov.)。模式菌株为NEAU-PCY-3(=DSM 105119=CCTCC AA 2017017)。

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