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黄壤食杆菌属,新属,新种,属于噬几丁质菌科,从草地土壤中分离得到。

Edaphobaculum flavum gen. nov., sp. nov., a member of family Chitinophagaceae, isolated from grassland soil.

作者信息

Cao Min, Huang Jing, Li Jingxin, Qiao Zixu, Wang Gejiao

机构信息

State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Nov;67(11):4475-4481. doi: 10.1099/ijsem.0.002316. Epub 2017 Sep 21.

Abstract

A yellow-coloured, Gram-stain-negative, non-motile, rod-shaped, strictly aerobic bacterium, designated 1-116, was isolated from Erdos grassland soil of Inner Mongolia, PR China. Phylogenetic analysis based on 16S rRNA genes showed that strain 1-116 was a member of family Chitinophagaceae and exhibited the highest similarities to Taibaiella koreensis THG-DT86 (90.1 %) and Flavihumibacter solisivae 3-3 (90.0 %), while the similarities to the other Chitinophagaceae type strains were lower than 90.0 %. Strain 1-116 grew at 16-33 °C (optimum 28 °C), pH 6.0-9.0 (optimum 7.0-8.0) and 0-0.5 % NaCl (w/v; optimum without NaCl). A flexirubin-type pigment was present. The DNA G+C content was 43.2 mol% and the only quinone present was menaquinone-7. The only polyamine detected was sym-homospermidine [30.7 µmol (g dry weight)] and the predominant fatty acids were iso-C15 : 0 (20.8 %), iso-C15 : 1 G (25.1 %), summed feature 4 (anteiso-C17 : 1 B and/or iso-C17 : 1 I; 13.8 %) and iso-C17 : 0 3-OH (13.2 %). The major polar lipids were phosphatidylethanolamine, three unidentified lipids, an unidentified aminophospholipid and an unidentified glycolipid. On the basis of the polyphasic analyses, strain 1-116 represents a novel genus and species in the family Chitinophagaceae, for which the name Edaphobaculum flavum gen. nov., sp. nov., is proposed. The type strain of Edaphobaculum flavum is 1-116 (=CCTCC AB 2017054=KCTC 52843).

摘要

从中国内蒙古鄂尔多斯草原土壤中分离出一株黄色、革兰氏染色阴性、无运动性、杆状、严格需氧的细菌,命名为1-116。基于16S rRNA基因的系统发育分析表明,菌株1-116是噬几丁质菌科的成员,与韩国太白杆菌THG-DT86(90.1%)和土壤黄腐杆菌3-3(90.0%)的相似性最高,而与其他噬几丁质菌科模式菌株的相似性低于90.0%。菌株1-116在16-33 °C(最适温度28 °C)、pH 6.0-9.0(最适pH 7.0-8.0)和0-0.5% NaCl(w/v;最适无NaCl)条件下生长。存在flexirubin型色素。DNA G+C含量为43.2 mol%,唯一存在的醌是甲基萘醌-7。检测到的唯一多胺是共生高亚精胺[30.7 µmol(干重g)],主要脂肪酸是异C15 : 0(20.8%)、异C15 : 1 G(25.1%)、总和特征4(anteiso-C17 : 1 B和/或异C17 : 1 I;13.8%)和异C17 : 0 3-OH(13.2%)。主要极性脂类是磷脂酰乙醇胺、三种未鉴定的脂类、一种未鉴定的氨基磷脂和一种未鉴定的糖脂。基于多相分析,菌株1-116代表噬几丁质菌科中的一个新属和新种,为此提出新属名黄壤杆菌属(Edaphobaculum),新种名黄壤杆菌(Edaphobaculum flavum)。黄壤杆菌的模式菌株是1-116(=CCTCC AB 2017054=KCTC 52843)。

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