Schauperl Michael, Podewitz Maren, Ortner Teresa S, Waibl Franz, Thoeny Alexander, Loerting Thomas, Liedl Klaus R
Institute of General, Inorganic and Theoretical Chemistry, Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80-82, 6020, Innsbruck, Austria.
Institute of Physical Chemistry, University of Innsbruck, Innrain 52c, 6020, Innsbruck, Austria.
Sci Rep. 2017 Sep 19;7(1):11901. doi: 10.1038/s41598-017-11982-8.
Antifreeze Proteins (AFPs) inhibit the growth of an ice crystal by binding to it. The detailed binding mechanism is, however, still not fully understood. We investigated three AFPs using Molecular Dynamics simulations in combination with Grid Inhomogeneous Solvation Theory, exploring their hydration thermodynamics. The observed enthalpic and entropic differences between the ice-binding sites and the inactive surface reveal key properties essential for proteins in order to bind ice: While entropic contributions are similar for all sites, the enthalpic gain for all ice-binding sites is lower than for the rest of the protein surface. In contrast to most of the recently published studies, our analyses show that enthalpic interactions are as important as an ice-like pre-ordering. Based on these observations, we propose a new, thermodynamically more refined mechanism of the ice recognition process showing that the appropriate balance between entropy and enthalpy facilitates ice-binding of proteins. Especially, high enthalpic interactions between the protein surface and water can hinder the ice-binding activity.
抗冻蛋白(AFPs)通过与冰晶结合来抑制其生长。然而,具体的结合机制仍未完全明确。我们结合网格非均匀溶剂化理论,利用分子动力学模拟研究了三种抗冻蛋白,探究它们的水合热力学。冰结合位点与非活性表面之间观察到的焓变和熵变揭示了蛋白质结合冰所必需的关键特性:虽然所有位点的熵贡献相似,但所有冰结合位点的焓增低于蛋白质表面的其他部分。与最近发表的大多数研究不同,我们的分析表明,焓相互作用与类似冰的预排序一样重要。基于这些观察结果,我们提出了一种新的、热力学上更精细的冰识别过程机制,表明熵与焓之间的适当平衡有助于蛋白质的冰结合。特别是,蛋白质表面与水之间的高焓相互作用会阻碍冰结合活性。