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重新审视蛇头鱼(硬骨鱼纲,鳢科)的条形码技术:发现更丰富的物种多样性并解决长期存在的分类学混乱问题。

Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions.

作者信息

Conte-Grand Cecilia, Britz Ralf, Dahanukar Neelesh, Raghavan Rajeev, Pethiyagoda Rohan, Tan Heok Hui, Hadiaty Renny K, Yaakob Norsham S, Rüber Lukas

机构信息

Naturhistorisches Museum der Burgergemeinde Bern, Bern, Switzerland.

Department of Life Sciences, Natural History Museum, London, United Kingdom.

出版信息

PLoS One. 2017 Sep 20;12(9):e0184017. doi: 10.1371/journal.pone.0184017. eCollection 2017.

Abstract

Snakehead fishes of the family Channidae are predatory freshwater teleosts from Africa and Asia comprising 38 valid species. Snakeheads are important food fishes (aquaculture, live food trade) and have been introduced widely with several species becoming highly invasive. A channid barcode library was recently assembled by Serrao and co-workers to better detect and identify potential and established invasive snakehead species outside their native range. Comparing our own recent phylogenetic results of this taxonomically confusing group with those previously reported revealed several inconsistencies that prompted us to expand and improve on previous studies. By generating 343 novel snakehead coxI sequences and combining them with an additional 434 coxI sequences from GenBank we highlight several problems with previous efforts towards the assembly of a snakehead reference barcode library. We found that 16.3% of the channid coxI sequences deposited in GenBank are based on misidentifications. With the inclusion of our own data we were, however, able to solve these cases of perpetuated taxonomic confusion. Different species delimitation approaches we employed (BIN, GMYC, and PTP) were congruent in suggesting a potentially much higher species diversity within snakeheads than currently recognized. In total, 90 BINs were recovered and within a total of 15 currently recognized species multiple BINs were identified. This higher species diversity is mostly due to either the incorporation of undescribed, narrow range, endemics from the Eastern Himalaya biodiversity hotspot or the incorporation of several widespread species characterized by deep genetic splits between geographically well-defined lineages. In the latter case, over-lumping in the past has deflated the actual species numbers. Further integrative approaches are clearly needed for providing a better taxonomic understanding of snakehead diversity, new species descriptions and taxonomic revisions of the group.

摘要

鳢科鱼类是来自非洲和亚洲的肉食性淡水硬骨鱼,包含38个有效物种。鳢是重要的食用鱼类(用于水产养殖、活饵贸易),已被广泛引入,有几个物种已成为极具入侵性的物种。最近,塞拉奥及其同事组装了一个鳢科条形码库,以便更好地检测和识别其原生范围之外潜在的和已确定的入侵鳢科物种。将我们自己最近对这个分类混乱的类群的系统发育结果与先前报道的结果进行比较,发现了一些不一致之处,这促使我们扩展并改进先前的研究。通过生成343条新的鳢科细胞色素c氧化酶亚基I(coxI)序列,并将它们与来自GenBank数据库的另外434条coxI序列相结合,我们突出了先前在组装鳢科参考条形码库方面的一些问题。我们发现,GenBank数据库中存放的鳢科coxI序列有16.3%是基于错误鉴定的。然而,纳入我们自己的数据后,我们能够解决这些长期存在的分类混乱问题。我们采用的不同物种界定方法(BIN、GMYC和PTP)都一致表明,鳢科鱼类的物种多样性可能比目前公认的要高得多。总共识别出90个BIN,在目前公认的15个物种中,有多个物种被识别出多个BIN。这种更高的物种多样性主要是由于纳入了未描述的、分布范围狭窄的东喜马拉雅生物多样性热点地区的特有物种,或者是纳入了几个广泛分布的物种,这些物种在地理上明确的谱系之间存在深度遗传分化。在后一种情况下,过去的过度归并减少了实际的物种数量。显然需要进一步的综合方法,以便更好地从分类学角度理解鳢科鱼类的多样性、描述新物种并对该类群进行分类修订。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eea5/5606936/023eae15860b/pone.0184017.g001.jpg

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