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通过非天然氨基酸的位点特异性掺入监测同源重组中的复制蛋白A(RPA)动态变化。

Monitoring Replication Protein A (RPA) dynamics in homologous recombination through site-specific incorporation of non-canonical amino acids.

作者信息

Pokhrel Nilisha, Origanti Sofia, Davenport Eric Parker, Gandhi Disha, Kaniecki Kyle, Mehl Ryan A, Greene Eric C, Dockendorff Chris, Antony Edwin

机构信息

Department of Biological Sciences, Marquette University, Milwaukee, WI 53201, USA.

Department of Chemistry, Marquette University, Milwaukee, WI 53201, USA.

出版信息

Nucleic Acids Res. 2017 Sep 19;45(16):9413-9426. doi: 10.1093/nar/gkx598.

Abstract

An essential coordinator of all DNA metabolic processes is Replication Protein A (RPA). RPA orchestrates these processes by binding to single-stranded DNA (ssDNA) and interacting with several other DNA binding proteins. Determining the real-time kinetics of single players such as RPA in the presence of multiple DNA processors to better understand the associated mechanistic events is technically challenging. To overcome this hurdle, we utilized non-canonical amino acids and bio-orthogonal chemistry to site-specifically incorporate a chemical fluorophore onto a single subunit of heterotrimeric RPA. Upon binding to ssDNA, this fluorescent RPA (RPAf) generates a quantifiable change in fluorescence, thus serving as a reporter of its dynamics on DNA in the presence of multiple other DNA binding proteins. Using RPAf, we describe the kinetics of facilitated self-exchange and exchange by Rad51 and mediator proteins during various stages in homologous recombination. RPAf is widely applicable to investigate its mechanism of action in processes such as DNA replication, repair and telomere maintenance.

摘要

复制蛋白A(RPA)是所有DNA代谢过程的重要协调者。RPA通过与单链DNA(ssDNA)结合并与其他几种DNA结合蛋白相互作用来协调这些过程。在存在多种DNA处理蛋白的情况下,确定诸如RPA等单个参与者的实时动力学,以更好地理解相关的机制事件,在技术上具有挑战性。为了克服这一障碍,我们利用非天然氨基酸和生物正交化学,将化学荧光团位点特异性地掺入异源三聚体RPA的单个亚基上。与ssDNA结合后,这种荧光RPA(RPAf)会产生可量化的荧光变化,从而作为其在存在多种其他DNA结合蛋白时在DNA上动态变化的报告分子。使用RPAf,我们描述了在同源重组的各个阶段中,Rad51和介导蛋白促进的自交换和交换的动力学。RPAf广泛适用于研究其在DNA复制、修复和端粒维持等过程中的作用机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf25/5766198/b9c0b67fbfdb/gkx598fig1.jpg

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