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KV7的基因组和质粒序列,KV7是一种从健康猪粪便中分离出的超广谱β-内酰胺酶菌株。

Genome and Plasmid Sequences of KV7, an Extended-Spectrum β-Lactamase Isolate Derived from Feces of a Healthy Pig.

作者信息

Bateman Michael D, de Vries Stefan P W, Gupta Srishti, Guardabassi Luca, Cavaco Lina M, Grant Andrew J, Holmes Mark A

机构信息

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

Ross University School of Veterinary Medicine, Basseterre, St. Kitts, West Indies.

出版信息

Genome Announc. 2017 Sep 21;5(38):e00595-17. doi: 10.1128/genomeA.00595-17.

Abstract

We present single-contig assemblies for strain KV7 (serotype O27, phylogenetic group D) and its six plasmids, isolated from a healthy pig, as determined by PacBio RS II and Illumina MiSeq sequencing. The chromosome of 4,997,475 bp and G+C content of 50.75% harbored 4,540 protein-encoding genes.

摘要

我们展示了从一头健康猪中分离出的菌株KV7(血清型O27,系统发育群D)及其六个质粒的单重叠群组装结果,这些结果是通过PacBio RS II和Illumina MiSeq测序确定的。该菌株的染色体长度为4,997,475 bp,G+C含量为50.75%,含有4,540个蛋白质编码基因。

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plasmidSPAdes: assembling plasmids from whole genome sequencing data.质粒SPAdes:从全基因组测序数据中组装质粒
Bioinformatics. 2016 Nov 15;32(22):3380-3387. doi: 10.1093/bioinformatics/btw493. Epub 2016 Jul 27.
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Prokka: rapid prokaryotic genome annotation.Prokka:快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.

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