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De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
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3
Control over overall shape and size in de novo designed proteins.
Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5478-85. doi: 10.1073/pnas.1509508112. Epub 2015 Sep 22.
4
Protein design: a hierarchic approach.
Science. 1995 Nov 10;270(5238):935-41. doi: 10.1126/science.270.5238.935.
5
Robust folding of a de novo designed ideal protein even with most of the core mutated to valine.
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Packing of apolar side chains enables accurate design of highly stable membrane proteins.
Science. 2019 Mar 29;363(6434):1418-1423. doi: 10.1126/science.aav7541.
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Robust -Designed Homotetrameric Coiled Coils.
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8
Introduction of a polar core into the de novo designed protein Top7.
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Solution structure of a de novo protein from a designed combinatorial library.
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Rosetta FunFolDes - A general framework for the computational design of functional proteins.
PLoS Comput Biol. 2018 Nov 19;14(11):e1006623. doi: 10.1371/journal.pcbi.1006623. eCollection 2018 Nov.

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Heuristic energy-based cyclic peptide design.
PLoS Comput Biol. 2025 Apr 30;21(4):e1012290. doi: 10.1371/journal.pcbi.1012290. eCollection 2025 Apr.
2
CYCLICCAE: A CONFORMATIONAL AUTOENCODER FOR EFFICIENT HETEROCHIRAL MACROCYCLIC BACKBONE SAMPLING.
bioRxiv. 2025 Feb 27:2025.02.21.639569. doi: 10.1101/2025.02.21.639569.
3
De novo design of transmembrane fluorescence-activating proteins.
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4
Tackling Undruggable Targets with Designer Peptidomimetics and Synthetic Biologics.
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Heuristic energy-based cyclic peptide design.
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6
De novo design of monomeric helical bundles for pH-controlled membrane lysis.
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Mismatched covalent and noncovalent templating leads to large coiled coil-templated macrocycles.
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8
Design and Engineering of Miniproteins.
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9
Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice.
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Reconfigurable asymmetric protein assemblies through implicit negative design.
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本文引用的文献

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Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability.
Angew Chem Int Ed Engl. 2001 Apr 17;40(8):1494-1496. doi: 10.1002/1521-3773(20010417)40:8<1494::AID-ANIE1494>3.0.CO;2-X.
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De novo design of a hyperstable non-natural protein-ligand complex with sub-Å accuracy.
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De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds.
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Accurate de novo design of hyperstable constrained peptides.
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Design of structurally distinct proteins using strategies inspired by evolution.
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Phage Selection of Chemically Stabilized α-Helical Peptide Ligands.
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An Effective Strategy for Stabilizing Minimal Coiled Coil Mimetics.
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Protein-Protein Interactions Mediated by Helical Tertiary Structure Motifs.
J Am Chem Soc. 2015 Sep 16;137(36):11622-30. doi: 10.1021/jacs.5b05527. Epub 2015 Sep 4.
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Acetone-Linked Peptides: A Convergent Approach for Peptide Macrocyclization and Labeling.
Angew Chem Int Ed Engl. 2015 Jul 20;54(30):8665-8. doi: 10.1002/anie.201502607. Epub 2015 Jun 11.
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Constrained peptides as miniature protein structures.
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