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本文引用的文献

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Assessing the imaging performance of light sheet microscopies in highly scattering tissues.评估光片显微镜在高散射组织中的成像性能。
Biomed Opt Express. 2016 Jan 14;7(2):454-66. doi: 10.1364/BOE.7.000454. eCollection 2016 Feb 1.
2
OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics.OptogenSIM:一种用于光遗传学中光传输设计的三维蒙特卡罗模拟平台。
Biomed Opt Express. 2015 Nov 16;6(12):4859-70. doi: 10.1364/BOE.6.004859. eCollection 2015 Dec 1.
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Subdiffusion reflectance spectroscopy to measure tissue ultrastructure and microvasculature: model and inverse algorithm.用于测量组织超微结构和微血管系统的亚扩散反射光谱法:模型与反演算法
J Biomed Opt. 2015;20(9):097002. doi: 10.1117/1.JBO.20.9.097002.
4
Penetration depth of focused beams in highly scattering media investigated with a numerical solution of Maxwell's equations in two dimensions.利用二维麦克斯韦方程组的数值解研究聚焦光束在高散射介质中的穿透深度。
J Biomed Opt. 2015 Jun;20(6):065007. doi: 10.1117/1.JBO.20.6.065007.
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Modeling focusing Gaussian beams in a turbid medium with Monte Carlo simulations.用蒙特卡罗模拟法对浑浊介质中的聚焦高斯光束进行建模。
Opt Express. 2015 Apr 6;23(7):8699-705. doi: 10.1364/OE.23.008699.
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Characterizing the beam steering and distortion of Gaussian and Bessel beams focused in tissues with microscopic heterogeneities.表征聚焦于具有微观异质性的组织中的高斯光束和贝塞尔光束的光束转向和畸变。
Biomed Opt Express. 2015 Mar 17;6(4):1318-30. doi: 10.1364/BOE.6.001318. eCollection 2015 Apr 1.
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Modeling Light Scattering in Tissue as Continuous Random Media Using a Versatile Refractive Index Correlation Function.使用通用折射率相关函数将组织中的光散射建模为连续随机介质。
IEEE J Sel Top Quantum Electron. 2013 Sep 6;20(2):7000514. doi: 10.1109/JSTQE.2013.2280999.
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Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.晶格层光片显微镜:以高时空分辨率对分子和胚胎进行成像。
Science. 2014 Oct 24;346(6208):1257998. doi: 10.1126/science.1257998. Epub 2014 Oct 23.
9
Tissue multifractality and Born approximation in analysis of light scattering: a novel approach for precancers detection.光散射分析中的组织多重分形与玻恩近似:一种用于癌前病变检测的新方法。
Sci Rep. 2014 Aug 20;4:6129. doi: 10.1038/srep06129.
10
Coupled forward-adjoint Monte Carlo simulation of spatial-angular light fields to determine optical sensitivity in turbid media.用于确定混浊介质中光学灵敏度的空间-角度光场耦合正向-伴随蒙特卡罗模拟。
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分形传播方法能够在生物组织中进行逼真的光学显微镜模拟。

Fractal propagation method enables realistic optical microscopy simulations in biological tissues.

作者信息

Glaser Adam K, Chen Ye, Liu Jonathan T C

机构信息

Department of Mechanical Engineering, University of Washington, Seattle, WA, USA.

出版信息

Optica. 2016;3(8):861-869. doi: 10.1364/OPTICA.3.000861.

DOI:10.1364/OPTICA.3.000861
PMID:28983499
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5626453/
Abstract

Current simulation methods for light transport in biological media have limited efficiency and realism when applied to three-dimensional microscopic light transport in biological tissues with refractive heterogeneities. We describe here a technique which combines a beam propagation method valid for modeling light transport in media with weak variations in refractive index, with a fractal model of refractive index turbulence. In contrast to standard simulation methods, this fractal propagation method (FPM) is able to accurately and efficiently simulate the diffraction effects of focused beams, as well as the microscopic heterogeneities present in tissue that result in scattering, refractive beam steering, and the aberration of beam foci. We validate the technique and the relationship between the FPM model parameters and conventional optical parameters used to describe tissues, and also demonstrate the method's flexibility and robustness by examining the steering and distortion of Gaussian and Bessel beams in tissue with comparison to experimental data. We show that the FPM has utility for the accurate investigation and optimization of optical microscopy methods such as light-sheet, confocal, and nonlinear microscopy.

摘要

当前用于生物介质中光传输的模拟方法,在应用于具有折射不均匀性的生物组织中的三维微观光传输时,效率和真实感有限。我们在此描述一种技术,该技术将适用于模拟折射率变化较弱的介质中光传输的光束传播方法与折射率湍流的分形模型相结合。与标准模拟方法相比,这种分形传播方法(FPM)能够准确且高效地模拟聚焦光束的衍射效应,以及组织中存在的导致散射、折射光束转向和光束焦点像差的微观不均匀性。我们验证了该技术以及FPM模型参数与用于描述组织的传统光学参数之间的关系,并通过将高斯光束和贝塞尔光束在组织中的转向和畸变与实验数据进行比较,展示了该方法的灵活性和稳健性。我们表明,FPM对于诸如光片显微镜、共聚焦显微镜和非线性显微镜等光学显微镜方法的精确研究和优化具有实用价值。