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粘细菌素生物合成中α-吡喃酮环形成的重构

reconstitution of α-pyrone ring formation in myxopyronin biosynthesis.

作者信息

Sucipto H, Sahner J H, Prusov E, Wenzel S C, Hartmann R W, Koehnke J, Müller R

机构信息

Department of Microbial Natural Products , Helmholtz Institute for Pharmaceutical Research Saarland , Building C2 3 , 66123 Saarbrücken , Germany . Email:

Department of Drug Design and Optimization , Helmholtz Institute for Pharmaceutical Research Saarland , Pharmaceutical and Medicinal Chemistry , Saarland University , Building C2 3 , 66123 Saarbrücken , Germany.

出版信息

Chem Sci. 2015 Aug 1;6(8):5076-5085. doi: 10.1039/c5sc01013f. Epub 2015 May 18.

DOI:10.1039/c5sc01013f
PMID:29308173
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5724707/
Abstract

Myxopyronins are α-pyrone antibiotics produced by the terrestrial bacterium Mx f50 and possess antibacterial activity against Gram-positive and Gram-negative pathogens. They target the bacterial RNA polymerase (RNAP) "switch region" as non-competitive inhibitors and display no cross-resistance to the established RNAP inhibitor rifampicin. Recent analysis of the myxopyronin biosynthetic pathway led to the hypothesis that this secondary metabolite is produced from two separate polyketide parts, which are condensed by the stand-alone ketosynthase MxnB. Using assays we show that MxnB catalyzes a unique condensation reaction forming the α-pyrone ring of myxopyronins from two activated acyl chains in form of their β-keto intermediates. MxnB is able to accept thioester substrates coupled to either -acetylcysteamine (NAC) or a specific carrier protein (CP). The turnover rate of MxnB for substrates bound to CP was 12-fold higher than for NAC substrates, demonstrating the importance of protein-protein interactions in polyketide synthase (PKS) systems. The crystal structure of MxnB reveals the enzyme to be an unusual member of the ketosynthase group capable of binding and condensing two long alkyl chains bound to carrier proteins. The geometry of the two binding tunnels supports the biochemical data and allows us to propose an order of reaction, which is supported by the identification of novel myxopyronin congeners in the extract of the producer strain. Insights into the mechanism of this unique condensation reaction do not only expand our knowledge regarding the thiolase enzyme family but also opens up opportunities for PKS bioengineering to achieve directed structural modifications.

摘要

粘吡喃菌素是由陆生细菌Mx f50产生的α-吡喃酮类抗生素,对革兰氏阳性和革兰氏阴性病原体具有抗菌活性。它们作为非竞争性抑制剂靶向细菌RNA聚合酶(RNAP)的“开关区域”,并且对已有的RNAP抑制剂利福平没有交叉耐药性。最近对粘吡喃菌素生物合成途径的分析提出了这样一个假说,即这种次生代谢产物是由两个独立的聚酮部分产生的,这两个部分由独立的酮合成酶MxnB缩合而成。通过实验我们表明,MxnB催化一种独特的缩合反应,由两个以β-酮中间体形式存在的活化酰基链形成粘吡喃菌素的α-吡喃酮环。MxnB能够接受与乙酰半胱氨酸(NAC)或特定载体蛋白(CP)偶联的硫酯底物。MxnB对与CP结合的底物的周转速率比对NAC底物的周转速率高12倍,这表明了蛋白质-蛋白质相互作用在聚酮合酶(PKS)系统中的重要性。MxnB的晶体结构揭示该酶是酮合成酶家族中一个不同寻常的成员,能够结合并缩合与载体蛋白结合的两条长烷基链。两个结合通道的几何结构支持了生化数据,并使我们能够提出一个反应顺序,这一顺序得到了生产菌株提取物中新型粘吡喃菌素同系物鉴定的支持。对这种独特缩合反应机制的深入了解不仅扩展了我们对硫解酶酶家族的认识,也为PKS生物工程实现定向结构修饰开辟了机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca15/5728011/f3b9e2142a77/c5sc01013f-s2.jpg
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