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探索巨大芽孢杆菌可溶性环氧化物水解酶选择性的起源。

Exploring the origins of selectivity in soluble epoxide hydrolase from Bacillus megaterium.

作者信息

Serrano-Hervás Eila, Garcia-Borràs Marc, Osuna Sílvia

机构信息

Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Carrer Maria Aurèlia Capmany 69, 17003 Girona, Spain.

Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, CA 90095, USA.

出版信息

Org Biomol Chem. 2017 Oct 25;15(41):8827-8835. doi: 10.1039/c7ob01847a.

Abstract

Epoxide hydrolase (EH) enzymes catalyze the hydration of racemic epoxides to yield their corresponding vicinal diols. These enzymes present different enantio- and regioselectivity depending upon either the substrate structure or the substitution pattern of the epoxide ring. In this study, we computationally investigate the Bacillus megaterium epoxide hydrolase (BmEH)-mediated hydrolysis of racemic styrene oxide (rac-SO) and its para-nitro styrene oxide (rac-p-NSO) derivative using density functional theory (DFT) and an active site cluster model consisting of 195 and 197 atoms, respectively. Full reaction mechanisms for epoxide ring opening were evaluated considering the attack at both oxirane carbons and considering two possible orientations of the substrate at the BmEH active site. Our results indicate that for both SO and p-NSO substrates the BmEH enantio- and regioselectivity is opposite to the inherent (R)-BmEH selectivity, the attack at the benzylic position (C1) of the (S)-enantiomer being the most favoured chemical outcome.

摘要

环氧水解酶(EH)催化外消旋环氧化物水合生成相应的邻位二醇。这些酶根据底物结构或环氧环的取代模式呈现出不同的对映选择性和区域选择性。在本研究中,我们使用密度泛函理论(DFT)以及分别由195和197个原子组成的活性位点簇模型,对巨大芽孢杆菌环氧水解酶(BmEH)介导的外消旋氧化苯乙烯(rac-SO)及其对硝基氧化苯乙烯(rac-p-NSO)衍生物的水解进行了计算研究。考虑到环氧环在两个环氧乙烷碳原子处的开环攻击以及底物在BmEH活性位点的两种可能取向,评估了环氧环开环的完整反应机理。我们的结果表明,对于SO和p-NSO底物,BmEH的对映选择性和区域选择性与固有的(R)-BmEH选择性相反,(S)-对映体在苄基位置(C1)的攻击是最有利的化学结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30c4/5708342/676ba9dde5a3/c7ob01847a-s1.jpg

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