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从肌尾噬菌体科、长尾噬菌体科和短尾噬菌体科新分离出的噬菌体对假定的新型弧菌属物种有不同影响。

Newly Isolated Bacteriophages from the , , and Families Have Variable Effects on Putative Novel spp.

作者信息

Alič Špela, Naglič Tina, Tušek-Žnidarič Magda, Ravnikar Maja, Rački Nejc, Peterka Matjaž, Dreo Tanja

机构信息

Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.

Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.

出版信息

Front Microbiol. 2017 Sep 28;8:1870. doi: 10.3389/fmicb.2017.01870. eCollection 2017.

Abstract

Soft rot pathogenic bacteria from the genus cause severe economic losses in orchid nurseries worldwide, and there is no effective control currently available. In the last decade, the genus has undergone multiple changes as multiple new taxa have been described, and just recently a new putative species was reported. This study reports the isolation of three bacteriophages active against putative novel spp. isolates from commercially produced infected orchids that show variable host-range profiles. Bacteriophages were isolated through enrichment from -infected orchid tissue. Convective interaction media monolith chromatography was used to isolate bacteriophages from wastewaters, demonstrating its suitability for the isolation of infective bacteriophages from natural sources. Based on bacteriophage morphology, all isolated bacteriophages were classified as being in the order , belonging to three different families, , , and . The presence of three different groups of bacteriophages was confirmed by analyzing the bacteriophage specificity of bacterial hosts, restriction fragment length polymorphism and plaque morphology. Bacteriophage BF25/12, the first reported bacteriophage effective against spp., was selected for further characterization. Its genome sequence determined by next-generation sequencing showed limited similarity to other characterized bacteriophages. Interactions among the bacteriophages and spp. were examined using transmission electron microscopy, which revealed degradation of electron-dense granules in response to bacteriophage infection in some strains. The temperature stability of the chosen bacteriophage monitored over 1 year showed a substantial decrease in the survival of bacteriophages stored at -20°C over longer periods. It showed susceptibility to low pH and UV radiation but was stable in neutral and alkaline pH. Furthermore, the stability of the tested bacteriophage was also connected to the incubation medium and bacteriophage concentration at certain pH values. Finally, the emergence of bacteriophage-resistant bacterial colonies is highly connected to the concentration of bacteriophages in the bacterial environment. This is the first report on bacteriophages against from the family to expand on potential bacteriophages to include in bacteriophage cocktails as biocontrol agents. Some of these bacteriophage isolates also showed activity against , an aggressive strain that causes the soft rot of potatoes, which indicates their broad potential as biocontrol agents.

摘要

[该属的]软腐病原菌在全球兰花苗圃中造成严重经济损失,目前尚无有效的防治方法。在过去十年中,随着多个新分类群被描述,[该属]经历了多次变化,最近还报道了一个新的假定[物种]。本研究报告了从商业生产的受感染兰花中分离出三种对假定的新型[物种]分离株具有活性的噬菌体,这些分离株表现出不同的宿主范围谱。通过从受[该菌]感染的兰花组织中富集来分离噬菌体。采用对流相互作用介质整体柱色谱法从废水中分离噬菌体,证明其适用于从天然来源分离感染性噬菌体。根据噬菌体形态,所有分离的噬菌体均被归类为[某目],属于三个不同的科,即[科名1]、[科名2]和[科名3]。通过分析细菌宿主的噬菌体特异性、限制性片段长度多态性和噬菌斑形态,证实了三种不同噬菌体群体的存在。噬菌体BF25/12是首个报道的对[物种]有效的[该属]噬菌体,被选作进一步表征。通过下一代测序确定的其基因组序列与其他已表征的[该属]噬菌体显示出有限的相似性。使用透射电子显微镜检查噬菌体与[物种]之间的相互作用,结果显示在某些[菌株]中,噬菌体感染会导致电子致密颗粒降解。对所选[该属]噬菌体进行了为期1年的温度稳定性监测,结果表明,长时间储存在-20°C的噬菌体存活率大幅下降。它对低pH值和紫外线辐射敏感,但在中性和碱性pH值下稳定。此外,在特定pH值下,测试噬菌体的稳定性还与孵育介质和噬菌体浓度有关。最后,噬菌体抗性细菌菌落的出现与细菌环境中噬菌体的浓度高度相关。这是关于来自[该科]的针对[该属]的噬菌体的首次报告,扩展了作为生物防治剂可纳入噬菌体混合物的潜在噬菌体范围。其中一些噬菌体分离株还对[某菌株]有活性,该菌株是导致马铃薯软腐的侵袭性菌株,这表明它们作为生物防治剂具有广泛的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/091f/5626979/63d99f79d1d2/fmicb-08-01870-g001.jpg

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