Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore.
Yale-NUS College, Singapore, 138614, Singapore.
BMC Genomics. 2017 Oct 16;18(1):788. doi: 10.1186/s12864-017-4175-7.
One hypothesis surrounding the origin of novel traits is that they originate from the co-option of pre-existing genes or larger gene regulatory networks into novel developmental contexts. Insights into a trait's evolutionary origins can, thus, be gained via identification of the genes underlying trait development, and exploring whether those genes also function in other developmental contexts. Here we investigate the set of genes associated with the development of eyespot color patterns, a trait that originated once within the Nymphalid family of butterflies. Although several genes associated with eyespot development have been identified, the eyespot gene regulatory network remains largely unknown.
In this study, next-generation sequencing and transcriptome analyses were used to identify a large set of genes associated with eyespot development of Bicyclus anynana butterflies, at 3-6 h after pupation, prior to the differentiation of the color rings. Eyespot-associated genes were identified by comparing the transcriptomes of homologous micro-dissected wing tissues that either develop or do not develop eyespots in wild-type and a mutant line of butterflies, Spotty, with extra eyespots. Overall, 186 genes were significantly up and down-regulated in wing tissues that develop eyespots compared to wing tissues that do not. Many of the differentially expressed genes have yet to be annotated. New signaling pathways, including the Toll, Fibroblast Growth Factor (FGF), extracellular signal-regulated kinase (ERK) and/or Jun N-terminal kinase (JNK) signaling pathways are associated for the first time with eyespot development. In addition, several genes involved in wound healing and calcium signaling were also found to be associated with eyespots.
Overall, this study provides the identity of many new genes and signaling pathways associated with eyespots, and suggests that the ancient wound healing gene regulatory network may have been co-opted to cells at the center of the pattern to aid in eyespot origins. New transcription factors that may be providing different identities to distinct wing sectors, and genes with sexually dimorphic expression in the eyespots were also identified.
围绕新特征起源的一个假说认为,它们起源于将预先存在的基因或更大的基因调控网络重新用于新的发育环境。因此,可以通过鉴定出控制特征发育的基因,并探索这些基因是否在其他发育环境中也起作用,来了解特征的进化起源。在这里,我们研究了与眼斑颜色图案发育相关的一组基因,该特征仅在蛱蝶科蝴蝶的一个分支中出现过一次。尽管已经鉴定出了几个与眼斑发育相关的基因,但眼斑基因调控网络在很大程度上仍然未知。
在这项研究中,使用下一代测序和转录组分析技术,在 3-6 小时后化蛹的蝴蝶翅膀组织中,在颜色环分化之前,鉴定出了与 Bicyclus anynana 蝴蝶眼斑发育相关的大量基因。通过比较同源微解剖翅膀组织的转录组,鉴定出与眼斑发育相关的基因,这些组织要么在野生型和具有额外眼斑的突变体 Spotty 蝴蝶中发育眼斑,要么不发育眼斑。总的来说,与不发育眼斑的翅膀组织相比,发育眼斑的翅膀组织中 186 个基因显著上调或下调。许多差异表达的基因尚未被注释。新的信号通路,包括 Toll、成纤维细胞生长因子 (FGF)、细胞外信号调节激酶 (ERK) 和/或 Jun N-末端激酶 (JNK) 信号通路,首次与眼斑发育相关。此外,还发现几个参与伤口愈合和钙信号的基因也与眼斑有关。
总的来说,这项研究提供了许多与眼斑相关的新基因和信号通路的身份,并表明古老的伤口愈合基因调控网络可能已被重新用于图案中心的细胞,以帮助眼斑的起源。还鉴定了可能为不同翅膀区域提供不同身份的新转录因子,以及在眼斑中具有性别二态性表达的基因。