PyBEL：一种用于生物表达语言的计算框架。
PyBEL: a computational framework for Biological Expression Language.
机构信息
Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin 53754, Germany.
Department of Life Science Informatics, Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53113, Germany.
出版信息
Bioinformatics. 2018 Feb 15;34(4):703-704. doi: 10.1093/bioinformatics/btx660.
SUMMARY
Biological Expression Language (BEL) assembles knowledge networks from biological relations across multiple modes and scales. Here, we present PyBEL; a software package for parsing, validating, converting, storing, querying, and visualizing networks encoded in BEL.
AVAILABILITY AND IMPLEMENTATION
PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel.
CONTACT
charles.hoyt@scai.fraunhofer.de.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
生物表达语言（BEL）从多个模式和尺度的生物关系中组装知识网络。在这里，我们提出了 PyBEL；一个用于解析、验证、转换、存储、查询和可视化 BEL 编码网络的软件包。
可用性和实现
PyBEL 是用与平台无关的通用 Python 代码实现的。它的源代码在 https://github.com/pybel 下以 Apache 2.0 许可证发布。
联系方式
charles.hoyt@scai.fraunhofer.de。
补充信息
补充数据可在生物信息学在线获得。
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