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保守分支点序列附近潜在的二级结构形成序列对酵母前体mRNA剪接的损害。

Impairment of yeast pre-mRNA splicing by potential secondary structure-forming sequences near the conserved branchpoint sequence.

作者信息

Halfter H, Gallwitz D

机构信息

Max-Planck-Institute for Biophysical Chemistry, Department of Molecular Genetics, Göttingen, FRG.

出版信息

Nucleic Acids Res. 1988 Nov 25;16(22):10413-23. doi: 10.1093/nar/16.22.10413.

DOI:10.1093/nar/16.22.10413
PMID:2905037
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC338914/
Abstract

The absolutely conserved TACTAAC box within introns of RNA polymerase II-transcribed genes of the yeast Saccharomyces cerevisiae serves an indispensable role in lariat formation. We show in this report that rather short palindromic sequences inserted into the yeast actin gene intron immediately 3' to the TACTAAC box block the second but not the first splicing step. In contrast, a palindromic sequence inserted some 23 bp 3' of the TACTAAC box did not affect correct and efficient splicing. The data suggest that hairpin structures that might form adjacent to the branchsite sequence interfere with some necessary alteration of the spliceosome required for 3' intron cleavage and exon ligation.

摘要

酵母酿酒酵母RNA聚合酶II转录基因内含子中的绝对保守的TACTAAC框在套索形成中起不可或缺的作用。我们在本报告中表明,插入酵母肌动蛋白基因内含子中紧接TACTAAC框下游3'的相当短的回文序列会阻断第二步而非第一步剪接步骤。相反,插入TACTAAC框下游约23 bp处的回文序列并不影响正确且高效的剪接。数据表明,可能在分支位点序列附近形成的发夹结构会干扰3'内含子切割和外显子连接所需的剪接体的某些必要改变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/87f39b1ae0cb/nar00164-0022-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/217914eb5a66/nar00164-0018-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/a4681167aded/nar00164-0019-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/8499045a2c87/nar00164-0020-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/87f39b1ae0cb/nar00164-0022-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/217914eb5a66/nar00164-0018-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/a4681167aded/nar00164-0019-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/8499045a2c87/nar00164-0020-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68de/338914/87f39b1ae0cb/nar00164-0022-a.jpg

相似文献

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Impairment of yeast pre-mRNA splicing by potential secondary structure-forming sequences near the conserved branchpoint sequence.保守分支点序列附近潜在的二级结构形成序列对酵母前体mRNA剪接的损害。
Nucleic Acids Res. 1988 Nov 25;16(22):10413-23. doi: 10.1093/nar/16.22.10413.
2
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Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron.酵母剪接复合体A1的形成以及剪接因子PRP19与前体mRNA的结合不依赖于内含子的3'区域。
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Mutations in conserved intron sequences affect multiple steps in the yeast splicing pathway, particularly assembly of the spliceosome.保守内含子序列中的突变会影响酵母剪接途径中的多个步骤,尤其是剪接体的组装。
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Size and position of intervening sequences are critical for the splicing efficiency of pre-mRNA in the yeast Saccharomyces cerevisiae.间隔序列的大小和位置对于酿酒酵母中前体mRNA的剪接效率至关重要。
Nucleic Acids Res. 1985 Jun 11;13(11):3791-804. doi: 10.1093/nar/13.11.3791.

引用本文的文献

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Conserved intronic secondary structures with concealed branch sites regulate alternative splicing of poison exons.保守的内含子二级结构与隐藏的分支位点调节毒素外显子的可变剪接。
Nucleic Acids Res. 2024 Jun 10;52(10):6002-6016. doi: 10.1093/nar/gkae185.
2
Impact on splicing in of random 50-base sequences inserted into an intron.插入内含子的随机 50 个碱基序列对剪接的影响。
RNA. 2023 Dec 18;30(1):52-67. doi: 10.1261/rna.079752.123.
3
Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons.U2AF1的可变剪接揭示了重复外显子的共享抑制机制。

本文引用的文献

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Isolation and sequence of the gene for actin in Saccharomyces cerevisiae.酿酒酵母肌动蛋白基因的分离与测序。
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Structure of a split yeast gene: complete nucleotide sequence of the actin gene in Saccharomyces cerevisiae.一个分裂酵母基因的结构:酿酒酵母肌动蛋白基因的完整核苷酸序列。
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Evidence for the biochemical role of an internal sequence in yeast nuclear mRNA introns: implications for U1 RNA and metazoan mRNA splicing.
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Far upstream element-binding protein 1 and RNA secondary structure both mediate second-step splicing repression.远上游元件结合蛋白 1 和 RNA 二级结构共同介导第二步剪接抑制。
Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):E2687-95. doi: 10.1073/pnas.1310607110. Epub 2013 Jul 1.
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Role of RNA structure in regulating pre-mRNA splicing.RNA 结构在调控前体 mRNA 剪接中的作用。
Trends Biochem Sci. 2010 Mar;35(3):169-78. doi: 10.1016/j.tibs.2009.10.004. Epub 2009 Dec 1.
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Influence of RNA secondary structure on the pre-mRNA splicing process.RNA二级结构对前体mRNA剪接过程的影响。
Mol Cell Biol. 2004 Dec;24(24):10505-14. doi: 10.1128/MCB.24.24.10505-10514.2004.
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Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene.果蝇乙醇脱氢酶基因中前体信使核糖核酸二级结构的补偿性进化
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11499-504. doi: 10.1073/pnas.1932834100. Epub 2003 Sep 12.
8
An upstream AG determines whether a downstream AG is selected during catalytic step II of splicing.上游剪接位点决定了在剪接的催化步骤II中是否选择下游剪接位点。
Mol Cell Biol. 2001 Mar;21(5):1509-14. doi: 10.1128/MCB.21.5.1509-1514.2001.
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Short artificial hairpins sequester splicing signals and inhibit yeast pre-mRNA splicing.短人工发夹可隔离剪接信号并抑制酵母前体mRNA剪接。
Mol Cell Biol. 1993 Nov;13(11):6841-8. doi: 10.1128/mcb.13.11.6841-6848.1993.
10
Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns.AG之间的扫描和竞争参与了哺乳动物内含子的3'剪接位点选择。
Mol Cell Biol. 1993 Aug;13(8):4939-52. doi: 10.1128/mcb.13.8.4939-4952.1993.
酵母核mRNA内含子内部序列的生化作用证据:对U1 RNA和后生动物mRNA剪接的影响
Cell. 1983 Sep;34(2):395-403. doi: 10.1016/0092-8674(83)90373-2.
4
Point mutations identify the conserved, intron-contained TACTAAC box as an essential splicing signal sequence in yeast.点突变确定了保守的、内含于内含子中的TACTAAC盒是酵母中一个必需的剪接信号序列。
Cell. 1984 Mar;36(3):645-53. doi: 10.1016/0092-8674(84)90344-1.
5
Yeast is unable to excise foreign intervening sequences from hybrid gene transcripts.酵母无法从杂交基因转录本中切除外来的间隔序列。
Proc Natl Acad Sci U S A. 1983 Mar;80(6):1496-500. doi: 10.1073/pnas.80.6.1496.
6
Transformation of intact yeast cells treated with alkali cations.经碱金属阳离子处理的完整酵母细胞的转化
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Evidence for an intron-contained sequence required for the splicing of yeast RNA polymerase II transcripts.酵母RNA聚合酶II转录本剪接所需的内含子包含序列的证据。
Cell. 1983 Jun;33(2):519-27. doi: 10.1016/0092-8674(83)90433-6.
8
Purification of a protein required for the splicing of pre-mRNA and its separation from the lariat debranching enzyme.前体信使核糖核酸剪接所需蛋白质的纯化及其与套索脱支酶的分离。
EMBO J. 1985 Dec 16;4(13A):3571-81. doi: 10.1002/j.1460-2075.1985.tb04119.x.
9
Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.超螺旋测序:一种用于质粒DNA测序的快速简便方法。
DNA. 1985 Apr;4(2):165-70. doi: 10.1089/dna.1985.4.165.
10
Cleavage of 5' splice site and lariat formation are independent of 3' splice site in yeast mRNA splicing.在酵母mRNA剪接过程中,5'剪接位点的切割和套索结构的形成与3'剪接位点无关。
Nature. 1985;317(6039):735-7. doi: 10.1038/317735a0.