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真核生物前导链/后随链DNA复制的检测方法。

Assays for Eukaryotic Leading/Lagging Strand DNA Replication.

作者信息

Schauer Grant, Finkelstein Jeff, O'Donnell Mike

机构信息

Howard Hughes Medical Institute, Rockefeller University, New York, USA.

出版信息

Bio Protoc. 2017 Sep 20;7(18). doi: 10.21769/BioProtoc.2548.

DOI:10.21769/BioProtoc.2548
PMID:29082290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5659624/
Abstract

The eukaryotic replisome is a multiprotein complex that duplicates DNA. The replisome is sculpted to couple continuous leading strand synthesis with discontinuous lagging strand synthesis, primarily carried out by DNA polymerases ε and δ, respectively, along with helicases, polymerase α-primase, DNA sliding clamps, clamp loaders and many other proteins. We have previously established the mechanisms by which the polymerases ε and δ are targeted to their 'correct' strands, as well as quality control mechanisms that evict polymerases when they associate with an 'incorrect' strand. Here, we provide a practical guide to differentially assay leading and lagging strand replication using pure proteins.

摘要

真核生物复制体是一种复制DNA的多蛋白复合体。复制体经过精心构建,以将连续的前导链合成与不连续的后随链合成偶联起来,这主要分别由DNA聚合酶ε和δ,以及解旋酶、聚合酶α-引发酶、DNA滑动夹、夹装载器和许多其他蛋白质来完成。我们之前已经确立了聚合酶ε和δ靶向其“正确”链的机制,以及当聚合酶与“错误”链结合时将其逐出的质量控制机制。在此,我们提供一份实用指南,介绍如何使用纯蛋白对前导链和后随链复制进行差异检测。

相似文献

1
Assays for Eukaryotic Leading/Lagging Strand DNA Replication.真核生物前导链/后随链DNA复制的检测方法。
Bio Protoc. 2017 Sep 20;7(18). doi: 10.21769/BioProtoc.2548.
2
Quality control mechanisms exclude incorrect polymerases from the eukaryotic replication fork.质量控制机制将错误的聚合酶排除在真核生物复制叉之外。
Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):675-680. doi: 10.1073/pnas.1619748114. Epub 2017 Jan 9.
3
The Eukaryotic Replication Machine.真核生物复制机器
Enzymes. 2016;39:191-229. doi: 10.1016/bs.enz.2016.03.004. Epub 2016 Apr 19.
4
The eukaryotic CMG helicase pumpjack and integration into the replisome.真核生物的CMG解旋酶抽油机及其整合到复制体中。
Nucleus. 2016 Apr 25;7(2):146-54. doi: 10.1080/19491034.2016.1174800.
5
Reconstitution of a eukaryotic replisome reveals the mechanism of asymmetric distribution of DNA polymerases.真核复制体的重建揭示了 DNA 聚合酶不对称分布的机制。
Nucleus. 2016 Jul 3;7(4):360-8. doi: 10.1080/19491034.2016.1205774.
6
CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.CMG解旋酶和DNA聚合酶ε形成一种功能性的15亚基全酶,用于真核生物前导链DNA复制。
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15390-5. doi: 10.1073/pnas.1418334111. Epub 2014 Oct 13.
7
Mechanism of Bidirectional Leading-Strand Synthesis Establishment at Eukaryotic DNA Replication Origins.真核生物DNA复制起点双向前导链合成建立的机制
Mol Cell. 2018 Nov 16;73(2):199-211.e10. doi: 10.1016/j.molcel.2018.10.019.
8
Fast and efficient DNA replication with purified human proteins.用纯化的人类蛋白质实现快速有效的 DNA 复制。
Nature. 2022 Jun;606(7912):204-210. doi: 10.1038/s41586-022-04759-1. Epub 2022 May 18.
9
Functions of Multiple Clamp and Clamp-Loader Complexes in Eukaryotic DNA Replication.多管和夹管装载复合物在真核 DNA 复制中的功能。
Adv Exp Med Biol. 2017;1042:135-162. doi: 10.1007/978-981-10-6955-0_7.
10
Single-molecule visualization of leading-strand synthesis reveals dynamic interaction between MTC and the replisome.单分子可视化研究领头链合成揭示了 MTC 与复制体之间的动态相互作用。
Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10630-10635. doi: 10.1073/pnas.1711291114. Epub 2017 Sep 18.

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Single-stranded nucleic acid binding and coacervation by linker histone H1.连接组蛋白 H1 对单链核酸的结合和凝聚作用。
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Replisome bypass of a protein-based R-loop block by Pif1.Pif1 绕过蛋白基 R 环阻碍物的复制体
Proc Natl Acad Sci U S A. 2020 Dec 1;117(48):30354-30361. doi: 10.1073/pnas.2020189117. Epub 2020 Nov 16.
5
Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks.APOBEC3A 诱导的尿嘧啶可视化显示与停滞复制叉处的 RPA 共定位。
Nucleic Acids Res. 2020 Nov 18;48(20):e118. doi: 10.1093/nar/gkaa845.
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Nuclease dead Cas9 is a programmable roadblock for DNA replication.核酸酶失活 Cas9 是 DNA 复制的可编程障碍。
Sci Rep. 2019 Sep 16;9(1):13292. doi: 10.1038/s41598-019-49837-z.
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Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.复制叉激活是由 CMG 解旋酶中的单链 DNA 门控实现的。
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本文引用的文献

1
Quality control mechanisms exclude incorrect polymerases from the eukaryotic replication fork.质量控制机制将错误的聚合酶排除在真核生物复制叉之外。
Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):675-680. doi: 10.1073/pnas.1619748114. Epub 2017 Jan 9.
2
Resolving individual steps of Okazaki-fragment maturation at a millisecond timescale.在毫秒时间尺度上解析冈崎片段成熟的各个步骤。
Nat Struct Mol Biol. 2016 May;23(5):402-8. doi: 10.1038/nsmb.3207. Epub 2016 Apr 11.
3
Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.真核生物复制体的重组揭示了定义前导链/后随链运作的抑制机制。
Elife. 2015 Apr 14;4:e04988. doi: 10.7554/eLife.04988.
4
CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.CMG解旋酶和DNA聚合酶ε形成一种功能性的15亚基全酶,用于真核生物前导链DNA复制。
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15390-5. doi: 10.1073/pnas.1418334111. Epub 2014 Oct 13.
5
Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.真核复制叉处不对称聚合酶组装的机制。
Nat Struct Mol Biol. 2014 Aug;21(8):664-70. doi: 10.1038/nsmb.2851. Epub 2014 Jul 6.
6
A solution to release twisted DNA during chromosome replication by coupled DNA polymerases.通过偶联 DNA 聚合酶在染色体复制过程中释放扭曲的 DNA 的解决方案。
Nature. 2013 Apr 4;496(7443):119-22. doi: 10.1038/nature11988. Epub 2013 Mar 27.
7
DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA.DNA聚合酶δ与增殖细胞核抗原结合时具有高度持续性,并在完成DNA合成后发生碰撞释放。
J Biol Chem. 2008 Oct 24;283(43):29522-31. doi: 10.1074/jbc.M804488200. Epub 2008 Jul 16.