Pupin M, Esmaeel Q, Flissi A, Dufresne Y, Jacques P, Leclère V
Univ Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France.
Inria-Lille Nord Europe, Villeneuve d'Ascq Cedex F-59655, France.
Synth Syst Biotechnol. 2016 Jun 1;1(2):89-94. doi: 10.1016/j.synbio.2015.11.001. eCollection 2016 Jun.
Since its first release in 2008, Norine remains the unique resource completely devoted to nonribosomal peptides (NRPs). They are very attractive microbial secondary metabolites, displaying a remarkable diversity of structure and functions. Norine (http://bioinfo.lifl.fr/NRP) includes a database now containing more than 1160 annotated peptides and user-friendly interfaces enabling the querying of the database, through the annotations or the structure of the peptides. Dedicated tools are associated for structural comparison of the compounds and prediction of their biological activities. In this paper, we start by describing the knowledgebase and the dedicated tools. We then present some user cases to show how useful Norine is for the discovery of novel nonribosomal peptides.
自2008年首次发布以来,Norine仍然是唯一完全专注于非核糖体肽(NRP)的资源。它们是非常有吸引力的微生物次级代谢产物,具有显著的结构和功能多样性。Norine(http://bioinfo.lifl.fr/NRP)包括一个数据库,目前包含1160多种注释肽以及用户友好的界面,可通过肽的注释或结构查询数据库。还关联了专用工具用于化合物的结构比较及其生物活性预测。在本文中,我们首先描述知识库和专用工具。然后展示一些用户案例,以说明Norine在发现新型非核糖体肽方面的实用性。