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针铁矿(100)表面/水界面处的弱结合水结构、键价饱和度和水动力学:从头算动力学模拟

Weakly bound water structure, bond valence saturation and water dynamics at the goethite (100) surface/aqueous interface: ab initio dynamical simulations.

作者信息

Chen Ying, Bylaska Eric J, Weare John H

机构信息

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, 92093, USA.

William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.

出版信息

Geochem Trans. 2017 Mar 31;18(1):3. doi: 10.1186/s12932-017-0040-5.

Abstract

BACKGROUND

Many important geochemical and biogeochemical reactions occur in the mineral/formation water interface of the highly abundant mineral, goethite [α-Fe(OOH)]. Ab initio molecular dynamics (AIMD) simulations of the goethite α-FeOOH (100) surface and the structure, water bond formation and dynamics of water molecules in the mineral/aqueous interface are presented. Several exchange correlation functionals were employed (PBE96, PBE96 + Grimme, and PBE0) in the simulations of a (3 × 2) goethite surface with 65 absorbed water molecules in a 3D-periodic supercell (a = 30 Å, FeOOH slab ~12 Å thick, solvation layer ~18 Å thick).

RESULTS

The lowest energy goethite (100) surface termination model was determined to have an exposed surface Fe that was loosely capped by a water molecule and a shared hydroxide with a neighboring surface Fe. The water molecules capping surface Fe ions were found to be loosely bound at all DFT levels with and without Grimme corrections, indicative that each surface Fe was coordinated with only five neighbors. These long bonds were supported by bond valence theory calculations, which showed that the bond valence of the surface Fe was saturated and surface has a neutral charge. The polarization of the water layer adjacent to the surface was found to be small and affected only the nearest water. Analysis by density difference plots and localized Boys orbitals identified three types of water molecules: those loosely bound to the surface Fe, those hydrogen bonded to the surface hydroxyl, and bulk water with tetrahedral coordination. Boys orbital analysis showed that the spin down lone pair orbital of the weakly absorbed water interact more strongly with the spin up Fe ion. These weakly bound surface water molecules were found to rapidly exchange with the second water layer (~0.025 exchanges/ps) using a dissociative mechanism.

CONCLUSIONS

Water molecules adjacent to the surface were found to only weakly interact with the surface and as a result were readily able to exchange with the bulk water. To account for the large surface Fe-OH distances in the DFT calculations it was proposed that the surface Fe atoms, which already have their bond valence fully satisfied with only five neighbors, are under-coordinated with respect to the bulk coordination. Graphical abstract All first principle calculations, at all practically achievable levels, for the goethite 100 aqueous interface support a long bond and weak interaction between the exposed surface Fe and water molecules capping the surface. This result is supported by bond valence theory calculations and is indicative that each surface Fe is coordinated with only 5 neighbors.

摘要

背景

许多重要的地球化学和生物地球化学反应发生在大量存在的矿物针铁矿[α-Fe(OOH)]的矿物/地层水界面。本文展示了针铁矿α-FeOOH(100)表面的从头算分子动力学(AIMD)模拟以及矿物/水界面中水分子的结构、水键形成和动力学。在一个包含65个吸附水分子的(3×2)针铁矿表面的3D周期超胞(a = 30 Å,FeOOH板层约12 Å厚,溶剂化层约18 Å厚)模拟中采用了几种交换相关泛函(PBE96、PBE96 + Grimme和PBE0)。

结果

确定了能量最低的针铁矿(100)表面终止模型具有一个暴露的表面Fe,该Fe被一个水分子松散覆盖,并与相邻表面Fe共享一个氢氧化物。发现在有无Grimme校正的所有DFT水平下,覆盖表面Fe离子的水分子都结合松散,这表明每个表面Fe仅与五个相邻原子配位。这些长键得到了键价理论计算的支持,该计算表明表面Fe的键价已饱和且表面带中性电荷。发现与表面相邻的水层极化很小,仅影响最邻近的水。通过密度差图和定域化Boys轨道分析确定了三种类型的水分子:那些松散结合在表面Fe上的水分子、那些与表面羟基形成氢键的水分子以及具有四面体配位的体相水。Boys轨道分析表明,弱吸附水的自旋向下孤对轨道与自旋向上的Fe离子相互作用更强。发现这些弱结合的表面水分子使用解离机制与第二层水快速交换(约0.025次交换/皮秒)。

结论

发现与表面相邻的水分子仅与表面弱相互作用,因此能够很容易地与体相水交换。为了解释DFT计算中较大的表面Fe-OH距离,有人提出表面Fe原子的键价已被仅五个相邻原子完全满足,相对于体相配位而言其配位不足。图形摘要在所有实际可实现的水平上,针对针铁矿100水界面的所有第一性原理计算都支持暴露的表面Fe与覆盖表面的水分子之间存在长键和弱相互作用。这一结果得到了键价理论计算的支持,表明每个表面Fe仅与5个相邻原子配位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2a8/5374091/5396ad7149b9/12932_2017_40_Figa_HTML.jpg

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