Joint BioEnergy Institute, Emeryville, CA, USA.
Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Nat Microbiol. 2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6.
Cultivation of microbial consortia provides low-complexity communities that can serve as tractable models to understand community dynamics. Time-resolved metagenomics demonstrated that an aerobic cellulolytic consortium cultivated from compost exhibited community dynamics consistent with the definition of an endogenous heterotrophic succession. The genome of the proposed pioneer population, 'Candidatus Reconcilibacillus cellulovorans', possessed a gene cluster containing multidomain glycoside hydrolases (GHs). Purification of the soluble cellulase activity from a 300litre cultivation of this consortium revealed that ~70% of the activity arose from the 'Ca. Reconcilibacillus cellulovorans' multidomain GHs assembled into cellulase complexes through glycosylation. These remarkably stable complexes have supramolecular structures for enzymatic cellulose hydrolysis that are distinct from cellulosomes. The persistence of these complexes during cultivation indicates that they may be active through multiple cultivations of this consortium and act as public goods that sustain the community. The provision of extracellular GHs as public goods may influence microbial community dynamics in native biomass-deconstructing communities relevant to agriculture, human health and biotechnology.
微生物群落的培养提供了低复杂度的群落,可以作为可理解群落动态的可处理模型。时间分辨宏基因组学表明,从堆肥中培养的好氧纤维素分解菌群落表现出与内源性异养演替定义一致的群落动态。拟议的先驱种群“Candidatus Reconcilibacillus cellulovorans”的基因组具有包含多结构域糖苷水解酶 (GHs) 的基因簇。从该群落的 300 升培养物中纯化可溶性纤维素酶活性表明,约 70%的活性来自“Ca. Reconcilibacillus cellulovorans”多结构域 GHs,通过糖基化组装成纤维素酶复合物。这些非常稳定的复合物具有用于酶解纤维素的超分子结构,与纤维素酶体不同。这些复合物在培养过程中的持续存在表明,它们可能在该群落的多次培养中都具有活性,并作为维持群落的公共物品发挥作用。作为公共物品提供细胞外 GHs 可能会影响与农业、人类健康和生物技术相关的天然生物质分解群落中的微生物群落动态。