产靛蓝细菌sp.菌株TSPH2的全基因组序列
Complete Genome Sequence of Indigo-Producing Bacterium sp. Strain TSPH2.
作者信息
Kim Hae-Seon, Cha Sun Ho, Suk Ho Young, Kwon Tae-Hyung, Woo Jung-Hee
机构信息
Gyeongbuk Institute for Marine Bio-Industry (GIMB), Uljin, Gyeongbuk, South Korea.
GenoTech Corporation, Daejeon, South Korea.
出版信息
Genome Announc. 2017 Nov 9;5(45):e01124-17. doi: 10.1128/genomeA.01124-17.
Abstract
sp. strain TSPH2, a novel producer of indigo, was isolated from oil-contaminated sediment. We present here its genome sequence consisting of one circular chromosome (4 Mb) and one plasmid (0.15 Mb), with an overall G+C content of 60.9%. This strain contains oxygenase genes involved in indigo synthesis, such as flavin-containing monooxygenase.
摘要
sp.菌株TSPH2是靛蓝的新型生产者，从受石油污染的沉积物中分离得到。我们在此展示其基因组序列，由一条环状染色体（4 Mb）和一个质粒（0.15 Mb）组成，总体G+C含量为60.9%。该菌株含有参与靛蓝合成的加氧酶基因，如含黄素单加氧酶。
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2
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3
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Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
4
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Biotechnol Lett. 2012 Feb;34(2):353-7. doi: 10.1007/s10529-011-0778-2. Epub 2011 Oct 22.
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