Department of Biomedical Sciences, University of Padua, via U. Bassi 58/b, 35131 Padua, Italy.
Institute of Biosciences and Medical Technology, Arvo Ylpön katu 34, 33520 Tampere, Finland.
Nucleic Acids Res. 2018 Jan 4;46(D1):D471-D476. doi: 10.1093/nar/gkx1071.
The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such as high temperature residues in X-ray structures and overall conformational diversity. Novel nuclear magnetic resonance chemical shift data provides an additional experimental information layer on conformational dynamics. Predictions have been expanded to provide new types of annotation on backbone rigidity, secondary structure preference and disordered binding regions. MobiDB 3.0 contains information for the complete UniProt protein set and synchronization has been improved by covering all UniParc sequences. An advanced search function allows the creation of a wide array of custom-made datasets for download and further analysis. A large amount of information and cross-links to more specialized databases are intended to make MobiDB the central resource for the scientific community working on protein intrinsic disorder and mobility.
MobiDB(网址:mobi db.bio.unipd.it)数据库中的蛋白质无序和迁移注释自 2014 年上次重大更新以来,已经得到了显著的更新和升级。从专门的数据库中整合了几个内在无序和结合折叠的已验证数据集。间接证据也得到了扩展,以更好地捕获 PDB 中可用的信息,例如 X 射线结构中的高温残基和整体构象多样性。新的核磁共振化学位移数据提供了构象动力学的额外实验信息层。预测得到了扩展,以提供关于骨架刚性、二级结构偏好和无序结合区域的新类型注释。MobiDB 3.0 包含完整的 UniProt 蛋白质集的信息,并且通过涵盖所有 UniParc 序列,同步性得到了改善。一个高级搜索功能允许创建广泛的自定义数据集以供下载和进一步分析。大量的信息和到更多专业数据库的链接旨在使 MobiDB 成为从事蛋白质内在无序和迁移的科学界的中心资源。