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使用金属/金属氧化物球形簇和羟基金属配位配合物进行描述符计算,以开发纳米颗粒细胞毒性分类模型。

Use of metal/metal oxide spherical cluster and hydroxyl metal coordination complex for descriptor calculation in development of nanoparticle cytotoxicity classification model.

机构信息

a Department of Biotechnology, College of Life Science and Biotechnology , Yonsei University , Seoul , Republic of Korea.

b Bioinformatics and Molecular Design Research Center , Yonsei Engineering Research Park , Seoul , Republic of Korea.

出版信息

SAR QSAR Environ Res. 2017 Nov;28(11):875-888. doi: 10.1080/1062936X.2017.1400998. Epub 2017 Nov 30.

Abstract

Computational approaches have been suggested as an informative tool for risk assessment of nanomaterials. Nano (quantitative) structure-activity relationship, nano-(Q)SAR, models have been developed to predict toxicity of metal oxide (MOx) nanoparticles (NPs); however, the packing structure and cluster of nanoparticle have been included for the descriptor calculation in only two studies. This study proposed spherical cluster and hydroxyl metal coordination complex to calculate descriptors for development of nanoparticle cytotoxicity classification model. The model cluster was generated from metal (M) or MOx crystal structure to calculate physicochemical properties of M/MOx NPs and the hydroxyl metal coordination complex was used to calculate the properties of the metal cation in an aqueous environment. Data were collected for 2 M and 19 MOx NPs in human bronchial epithelial cell lines and murine myeloid cell lines at 100 μg/ml after 24 hours exposure. The model was developed with scaled HOMO energy of the model cluster and polarizability of the hydroxyl metal coordination complex, as reactivity of the particles and the cations explained cause of cytotoxic action by M/MOx NPs. As the developed model achieved 90.31% accuracy, the classification model in this work can be used for virtual screening of toxic action of M/MOx NPs.

摘要

计算方法被认为是纳米材料风险评估的一种有用工具。已经开发了纳米(定量)结构-活性关系(Nano-(Q)SAR)模型,以预测金属氧化物(MOx)纳米颗粒(NPs)的毒性;然而,在仅有两项研究中,将纳米颗粒的堆积结构和簇包含在描述符计算中。本研究提出了球形簇和羟基金属配位络合物,以计算描述符,从而开发纳米颗粒细胞毒性分类模型。该模型簇由金属(M)或 MOx 晶体结构生成,用于计算 M/MOx NPs 的物理化学性质,而羟基金属配位络合物用于计算水相环境中金属阳离子的性质。在暴露 24 小时后,在 100 μg/ml 下,在人支气管上皮细胞系和鼠髓样细胞系中收集了 2 M 和 19 MOx NPs 的数据。该模型是用模型簇的 HOMO 能量和羟基金属配位络合物的极化率来开发的,因为颗粒和阳离子的反应性解释了 M/MOx NPs 细胞毒性作用的原因。由于所开发的模型达到了 90.31%的准确性,因此本工作中的分类模型可用于 M/MOx NPs 毒性作用的虚拟筛选。

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