School of Physics, Shandong University, Jinan, 250100, China.
Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, China.
Sci Rep. 2017 Dec 5;7(1):16985. doi: 10.1038/s41598-017-17243-y.
G protein-coupled receptors (GPCRs) constitute a large family of membrane proteins that plays a key role in transmembrane signal transduction and draw wide attention since it was discovered. Arrestin is a small family of proteins which can bind to GPCRs, block G protein interactions and redirect signaling to G-protein-independent pathways. The detailed mechanism of how arrestin interacts with GPCR remains elusive. Here, we conducted molecular dynamics simulations with coarse-grained (CG) and all-atom (AA) models to study the complex structure formed by arrestin and rhodopsin, a prototypical GPCR, in a POPC bilayer. Our results indicate that the formation of the complex has a significant impact on arrestin which is tightly anchored onto the bilayer surface, while has a minor effect on the orientation of rhodopsin in the lipid bilayer. The formation of the complex induces an internal change of conformation and flexibility in both rhodopsin and arrestin, mainly at the binding interface. Further investigation on the interaction interface identified the hydrogen bond network, especially the long-lived hydrogen bonds, and the key residues at the contact interface, which are responsible for stabilizing the complex. These results help us to better understand how rhodopsin interacts with arrestin on membranes, and thereby shed lights on arrestin-mediated signal transduction through GPCRs.
G 蛋白偶联受体(GPCRs)是一大类膜蛋白,在跨膜信号转导中起着关键作用,自发现以来引起了广泛关注。 arrestin 是一小类能够与 GPCR 结合的蛋白质,它可以阻断 G 蛋白相互作用,并将信号重新导向到 G 蛋白非依赖性途径。 arrestin 与 GPCR 相互作用的详细机制仍不清楚。在这里,我们使用粗粒化(CG)和全原子(AA)模型进行分子动力学模拟,研究了 arrestin 和视紫红质(一种典型的 GPCR)在 POPC 双层膜中形成的复合物结构。我们的结果表明,复合物的形成对视紫红质有显著影响,使其紧密锚定在双层膜表面,而对视紫红质在脂质双层中的取向影响较小。复合物的形成诱导了视紫红质和 arrestin 内部构象和柔韧性的变化,主要发生在结合界面。进一步研究相互作用界面确定了氢键网络,特别是长寿命氢键和接触界面上的关键残基,它们负责稳定复合物。这些结果有助于我们更好地理解视紫红质如何在膜上与 arrestin 相互作用,从而揭示 arrestin 通过 GPCR 介导的信号转导。