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FASTCORE家族:用于快速重建紧凑的特定上下文代谢网络模型。

The FASTCORE Family: For the Fast Reconstruction of Compact Context-Specific Metabolic Networks Models.

作者信息

Pacheco Maria Pires, Sauter Thomas

机构信息

Life Sciences Research Unit, University of Luxembourg, Belvaux, Luxembourg.

出版信息

Methods Mol Biol. 2018;1716:101-110. doi: 10.1007/978-1-4939-7528-0_4.


DOI:10.1007/978-1-4939-7528-0_4
PMID:29222750
Abstract

The FASTCORE family is a family of algorithms that are mainly used to build context-specific models but can also be applied to other tasks such as gapfilling and consistency testing. The FASTCORE family has very low computational demands with running times that are several orders of magnitude lower than its main competitors. Furthermore, the models built by the FASTCORE family have a better resolution power (defined as the ability to capture metabolic variations between different tissues, cell types, or contexts) than models from other algorithms.

摘要

FASTCORE家族是一族算法,主要用于构建特定上下文模型,但也可应用于其他任务,如缺口填充和一致性测试。FASTCORE家族的计算需求非常低,运行时间比其主要竞争对手低几个数量级。此外,与其他算法构建的模型相比,FASTCORE家族构建的模型具有更好的分辨率能力(定义为捕获不同组织、细胞类型或上下文之间代谢变化的能力)。

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