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黑色素瘤的计算模型。

Computational models of melanoma.

机构信息

Systems Biology Group, Life Science Research Unit, University of Luxembourg, 6, avenue du Swing, Belval, 4367, Luxembourg.

Experimental Dermatology, Department of Dermatology, Dresden University of Technology, Fetscherstraße 105, Dresden, 01307, Germany.

出版信息

Theor Biol Med Model. 2020 May 14;17(1):8. doi: 10.1186/s12976-020-00126-7.

DOI:10.1186/s12976-020-00126-7
PMID:32410672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7222475/
Abstract

Genes, proteins, or cells influence each other and consequently create patterns, which can be increasingly better observed by experimental biology and medicine. Thereby, descriptive methods of statistics and bioinformatics sharpen and structure our perception. However, additionally considering the interconnectivity between biological elements promises a deeper and more coherent understanding of melanoma. For instance, integrative network-based tools and well-grounded inductive in silico research reveal disease mechanisms, stratify patients, and support treatment individualization. This review gives an overview of different modeling techniques beyond statistics, shows how different strategies align with the respective medical biology, and identifies possible areas of new computational melanoma research.

摘要

基因、蛋白质或细胞相互影响,进而产生模式,实验生物学和医学可以越来越清晰地观察到这些模式。因此,统计学和生物信息学的描述性方法可以提高和优化我们的认知。然而,考虑到生物元素之间的相互连接性,有望更深入、更连贯地理解黑色素瘤。例如,基于整合网络的工具和有充分依据的归纳计算研究揭示了疾病机制、对患者进行分层,并支持治疗个体化。本文综述了统计学之外的不同建模技术,展示了不同策略如何与相应的医学生物学保持一致,并确定了计算黑色素瘤研究的新的可能领域。

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Experimental Models for Rare Melanoma Research-The Niche That Needs to Be Addressed.

本文引用的文献

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The 2018 World Health Organization Classification of Cutaneous, Mucosal, and Uveal Melanoma: Detailed Analysis of 9 Distinct Subtypes Defined by Their Evolutionary Pathway.2018 年世界卫生组织皮肤、黏膜和葡萄膜黑色素瘤分类:基于演进途径的 9 种不同亚型的详细分析。
Arch Pathol Lab Med. 2020 Apr;144(4):500-522. doi: 10.5858/arpa.2019-0561-RA. Epub 2020 Feb 14.
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The Role of Melanoma Cell-Stroma Interaction in Cell Motility, Invasion, and Metastasis.黑色素瘤细胞与基质相互作用在细胞运动、侵袭和转移中的作用
Front Med (Lausanne). 2018 Nov 6;5:307. doi: 10.3389/fmed.2018.00307. eCollection 2018.
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Systemic network analysis identifies XIAP and IκBα as potential drug targets in TRAIL resistant BRAF mutated melanoma.
罕见黑色素瘤研究的实验模型——亟待解决的领域
Bioengineering (Basel). 2023 Jun 1;10(6):673. doi: 10.3390/bioengineering10060673.
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The Challenging Melanoma Landscape: From Early Drug Discovery to Clinical Approval.充满挑战的黑色素瘤领域:从早期药物发现到临床批准。
Cells. 2021 Nov 9;10(11):3088. doi: 10.3390/cells10113088.
系统网络分析确定XIAP和IκBα是TRAIL耐药性BRAF突变黑色素瘤中的潜在药物靶点。
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Man against machine: diagnostic performance of a deep learning convolutional neural network for dermoscopic melanoma recognition in comparison to 58 dermatologists.人机大战:深度学习卷积神经网络与 58 位皮肤科医生诊断黑色素瘤皮肤镜图像的对比研究
Ann Oncol. 2018 Aug 1;29(8):1836-1842. doi: 10.1093/annonc/mdy166.
5
Tensile Forces and Mechanotransduction at Cell-Cell Junctions.细胞连接处的张力和机械转导。
Curr Biol. 2018 Apr 23;28(8):R445-R457. doi: 10.1016/j.cub.2018.02.003.
6
The next generation of melanocyte data: Genetic, epigenetic, and transcriptional resource datasets and analysis tools.下一代黑素细胞数据:遗传、表观遗传和转录资源数据集和分析工具。
Pigment Cell Melanoma Res. 2018 May;31(3):442-447. doi: 10.1111/pcmr.12687. Epub 2018 Feb 1.
7
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J Proteomics. 2018 Mar 1;174:1-8. doi: 10.1016/j.jprot.2017.12.013. Epub 2017 Dec 22.
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The FASTCORE Family: For the Fast Reconstruction of Compact Context-Specific Metabolic Networks Models.FASTCORE家族:用于快速重建紧凑的特定上下文代谢网络模型。
Methods Mol Biol. 2018;1716:101-110. doi: 10.1007/978-1-4939-7528-0_4.
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Why target the tumor stroma in melanoma?为什么要将黑色素瘤中的肿瘤基质作为靶点?
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