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Determining Risk of Barrett's Esophagus and Esophageal Adenocarcinoma Based on Epidemiologic Factors and Genetic Variants.

作者信息

Dong Jing, Buas Matthew F, Gharahkhani Puya, Kendall Bradley J, Onstad Lynn, Zhao Shanshan, Anderson Lesley A, Wu Anna H, Ye Weimin, Bird Nigel C, Bernstein Leslie, Chow Wong-Ho, Gammon Marilie D, Liu Geoffrey, Caldas Carlos, Pharoah Paul D, Risch Harvey A, Iyer Prasad G, Reid Brian J, Hardie Laura J, Lagergren Jesper, Shaheen Nicholas J, Corley Douglas A, Fitzgerald Rebecca C, Whiteman David C, Vaughan Thomas L, Thrift Aaron P

机构信息

Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington; Department of Cancer Prevention and Control, Roswell Park Cancer Institute, Buffalo, New York.

出版信息

Gastroenterology. 2018 Apr;154(5):1273-1281.e3. doi: 10.1053/j.gastro.2017.12.003. Epub 2017 Dec 13.


DOI:10.1053/j.gastro.2017.12.003
PMID:29247777
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5880715/
Abstract

BACKGROUND & AIMS: We developed comprehensive models to determine risk of Barrett's esophagus (BE) or esophageal adenocarcinoma (EAC) based on genetic and non-genetic factors. METHODS: We used pooled data from 3288 patients with BE, 2511 patients with EAC, and 2177 individuals without either (controls) from participants in the international Barrett's and EAC consortium as well as the United Kingdom's BE gene study and stomach and esophageal cancer study. We collected data on 23 genetic variants associated with risk for BE or EAC, and constructed a polygenic risk score (PRS) for cases and controls by summing the risk allele counts for the variants weighted by their natural log-transformed effect estimates (odds ratios) extracted from genome-wide association studies. We also collected data on demographic and lifestyle factors (age, sex, smoking, body mass index, use of nonsteroidal anti-inflammatory drugs) and symptoms of gastroesophageal reflux disease (GERD). Risk models with various combinations of non-genetic factors and the PRS were compared for their accuracy in identifying patients with BE or EAC using the area under the receiver operating characteristic curve (AUC) analysis. RESULTS: Individuals in the highest quartile of risk, based on genetic factors (PRS), had a 2-fold higher risk of BE (odds ratio, 2.22; 95% confidence interval, 1.89-2.60) or EAC (odds ratio, 2.46; 95% confidence interval, 2.07-2.92) than individual in the lowest quartile of risk based on PRS. Risk models developed based on only demographic or lifestyle factors or GERD symptoms identified patients with BE or EAC with AUC values ranging from 0.637 to 0.667. Combining data on demographic or lifestyle factors with data on GERD symptoms identified patients with BE with an AUC of 0.793 and patients with EAC with an AUC of 0.745. Including PRSs with these data only minimally increased the AUC values for BE (to 0.799) and EAC (to 0.754). Including the PRSs in the model developed based on non-genetic factors resulted in a net reclassification improvement for BE of 3.0% and for EAC of 5.6%. CONCLUSIONS: We used data from 3 large databases of patients from studies of BE or EAC to develop a risk prediction model based on genetic, clinical, and demographic/lifestyle factors. We identified a PRS that increases discrimination and net reclassification of individuals with vs without BE and EAC. However, the absolute magnitude of improvement is not sufficient to justify its clinical use.

摘要

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本文引用的文献

[1]
Risk assessment models for genetic risk predictors of lung cancer using two-stage replication for Asian and European populations.

Oncotarget. 2016-7-5

[2]
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Clin Gastroenterol Hepatol. 2017-7

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J Natl Cancer Inst. 2017-1-27

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Risk Prediction for Epithelial Ovarian Cancer in 11 United States-Based Case-Control Studies: Incorporation of Epidemiologic Risk Factors and 17 Confirmed Genetic Loci.

Am J Epidemiol. 2016-10-15

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Prediction Models for Gastrointestinal and Liver Diseases: Too Many Developed, Too Few Validated.

Clin Gastroenterol Hepatol. 2016-12

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Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.

Lancet Oncol. 2016-10

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Adding genetic risk score to family history identifies twice as many high-risk men for prostate cancer: Results from the prostate cancer prevention trial.

Prostate. 2016-9

[9]
The epidemic of oesophageal carcinoma: Where are we now?

Cancer Epidemiol. 2016-4

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A model for predicting individuals' absolute risk of esophageal adenocarcinoma: Moving toward tailored screening and prevention.

Int J Cancer. 2016-6-15

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