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一个利用分布数据协助进行大规模多物种初步保护评估的R软件包。

: An R package to assist large-scale multispecies preliminary conservation assessments using distribution data.

作者信息

Dauby Gilles, Stévart Tariq, Droissart Vincent, Cosiaux Ariane, Deblauwe Vincent, Simo-Droissart Murielle, Sosef Marc S M, Lowry Porter P, Schatz George E, Gereau Roy E, Couvreur Thomas L P

机构信息

Institut de Recherche pour le Développement (IRD) Université Montpellier, UMR DIADE Montpellier France.

Evolutionary Biology and Ecology Unit Faculté des Sciences Université Libre de Bruxelles Bruxelles Belgium.

出版信息

Ecol Evol. 2017 Dec 16;7(24):11292-11303. doi: 10.1002/ece3.3704. eCollection 2017 Dec.

DOI:10.1002/ece3.3704
PMID:29299301
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5743656/
Abstract

The Red List Categories and the accompanying five criteria developed by the International Union for Conservation of Nature (IUCN) provide an authoritative and comprehensive methodology to assess the conservation status of organisms. Red List criterion B, which principally uses distribution data, is the most widely used to assess conservation status, particularly of plant species. No software package has previously been available to perform large-scale multispecies calculations of the three main criterion B parameters [extent of occurrence (EOO), area of occupancy (AOO) and an estimate of the number of locations] and provide preliminary conservation assessments using an automated batch process. We developed , a dedicated R package, as a rapid and efficient tool to conduct large numbers of preliminary assessments, thereby facilitating complete Red List assessment. (1) calculates key geographic range parameters (AOO and EOO) and estimates the number of locations IUCN needed for an assessment under criterion B; (2) uses this information in a batch process to generate preliminary assessments of multiple species; (3) summarize the parameters and preliminary assessments in a spreadsheet; and (4) provides a visualization of the results by generating maps suitable for the submission of full assessments to the IUCN Red List. can be used for any living organism for which reliable georeferenced distribution data are available. As distributional data for taxa become increasingly available via large open access datasets, provides a novel, timely tool to guide and accelerate the work of the conservation and taxonomic communities by enabling practitioners to conduct preliminary assessments simultaneously for hundreds or even thousands of species in an efficient and time-saving way.

摘要

国际自然保护联盟(IUCN)制定的红色名录类别及相应的五项标准提供了一种权威且全面的方法来评估生物的保护状况。主要使用分布数据的红色名录标准B是评估保护状况(尤其是植物物种)最广泛使用的标准。以前没有软件包可用于对标准B的三个主要参数[分布范围(EOO)、占有面积(AOO)和地点数量估计值]进行大规模多物种计算,并通过自动化批处理过程提供初步保护评估。我们开发了一个专用的R软件包,作为一种快速有效的工具来进行大量的初步评估,从而促进完整的红色名录评估。(1)计算关键地理范围参数(AOO和EOO),并估计标准B评估所需的IUCN地点数量;(2)在批处理过程中使用此信息生成多个物种的初步评估;(3)在电子表格中汇总参数和初步评估;(4)通过生成适合向IUCN红色名录提交完整评估的地图来可视化结果。该软件包可用于任何有可靠地理参考分布数据的生物。随着通过大型开放获取数据集越来越容易获得分类群的分布数据,该软件包提供了一种新颖、及时的工具,通过使从业者能够以高效、省时的方式同时对数百甚至数千个物种进行初步评估,来指导和加速保护及分类学界的工作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7390/5743656/4a57bc1ae1b5/ECE3-7-11292-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7390/5743656/690058e5845b/ECE3-7-11292-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7390/5743656/4a57bc1ae1b5/ECE3-7-11292-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7390/5743656/690058e5845b/ECE3-7-11292-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7390/5743656/4a57bc1ae1b5/ECE3-7-11292-g002.jpg

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