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结构决定功能:聚焦Xist长链非编码RNA

Function by Structure: Spotlights on Xist Long Non-coding RNA.

作者信息

Pintacuda Greta, Young Alexander N, Cerase Andrea

机构信息

Department of Biochemistry, University of Oxford, Oxford, United Kingdom.

European Molecular Biology Laboratory, Monterotondo, Italy.

出版信息

Front Mol Biosci. 2017 Dec 19;4:90. doi: 10.3389/fmolb.2017.00090. eCollection 2017.

DOI:10.3389/fmolb.2017.00090
PMID:29302591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5742192/
Abstract

Recent experimental evidence indicates that lncRNAs can act as regulatory molecules in the context of development and disease. Xist, the master regulator of X chromosome inactivation, is a classic example of how lncRNAs can exert multi-layered and fine-tuned regulatory functions, by acting as a molecular scaffold for recruitment of distinct protein factors. In this review, we discuss the methodologies employed to define Xist RNA structures and the tight interplay between structural clues and functionality of lncRNAs. This model of modular function dictated by structure, can be also generalized to other lncRNAs, beyond the field of X chromosome inactivation, to explain common features of similarly folded RNAs.

摘要

最近的实验证据表明,lncRNAs在发育和疾病背景下可作为调控分子。Xist是X染色体失活的主要调节因子,是lncRNAs如何通过作为招募不同蛋白质因子的分子支架发挥多层次和精细调控功能的经典例子。在这篇综述中,我们讨论了用于定义Xist RNA结构的方法以及lncRNAs结构线索与功能之间的紧密相互作用。这种由结构决定的模块化功能模型,也可以推广到X染色体失活领域之外的其他lncRNAs,以解释折叠相似的RNAs的共同特征。

相似文献

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Function by Structure: Spotlights on Xist Long Non-coding RNA.结构决定功能:聚焦Xist长链非编码RNA
Front Mol Biosci. 2017 Dec 19;4:90. doi: 10.3389/fmolb.2017.00090. eCollection 2017.
2
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本文引用的文献

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hnRNPK Recruits PCGF3/5-PRC1 to the Xist RNA B-Repeat to Establish Polycomb-Mediated Chromosomal Silencing.异质性核糖核蛋白K将PCGF3/5 - 多梳抑制复合体1招募至Xist RNA B重复序列以建立多梳介导的染色体沉默。
Mol Cell. 2017 Dec 7;68(5):955-969.e10. doi: 10.1016/j.molcel.2017.11.013.
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Mechanistic insights in X-chromosome inactivation.X 染色体失活的机制研究进展
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Repeat E anchors Xist RNA to the inactive X chromosomal compartment through CDKN1A-interacting protein (CIZ1).
Int J Mol Sci. 2025 Apr 12;26(8):3668. doi: 10.3390/ijms26083668.
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Multifaceted role of CTCF in X-chromosome inactivation.CTCF 在 X 染色体失活中的多重作用。
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Competing endogenous RNAs regulatory crosstalk networks: The messages from the RNA world to signaling pathways directing cancer stem cell development.竞争性内源RNA调控互作网络:从RNA世界到指导癌症干细胞发育的信号通路的信息
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XIST dampens X chromosome activity in a SPEN-dependent manner during early human development.XIST 通过依赖于 SPEN 的方式在人类早期胚胎发育中抑制 X 染色体活性。
Nat Struct Mol Biol. 2024 Oct;31(10):1589-1600. doi: 10.1038/s41594-024-01325-3. Epub 2024 Jun 4.
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Pivotal functions and impact of long con-coding RNAs on cellular processes and genome integrity.长链非编码 RNA 的关键功能及其对细胞过程和基因组完整性的影响。
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RNA: The Unsuspected Conductor in the Orchestra of Macromolecular Crowding.RNA:大分子拥挤环境中的幕后指挥者
Chem Rev. 2024 Apr 24;124(8):4734-4777. doi: 10.1021/acs.chemrev.3c00575. Epub 2024 Apr 5.
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Preferential formation of Z-RNA over intercalated motifs in long noncoding RNA.长非编码 RNA 中 Z-RNA 优先形成于插入基序。
Genome Res. 2024 Mar 20;34(2):217-230. doi: 10.1101/gr.278236.123.
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[Not Available].[无可用内容]
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重复 E 通过与 CDKN1A 相互作用的蛋白(CIZ1)将 Xist RNA 锚定到失活 X 染色体隔室。
Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10654-10659. doi: 10.1073/pnas.1711206114. Epub 2017 Sep 18.
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LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis.LncRNA-PAGBC 通过充当 microRNA 海绵促进胆囊肿瘤发生。
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Probing Long Non-coding RNA-Protein Interactions.探索长链非编码RNA与蛋白质的相互作用。
Front Mol Biosci. 2017 Jul 11;4:45. doi: 10.3389/fmolb.2017.00045. eCollection 2017.
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Xist RNA repeat E is essential for ASH2L recruitment to the inactive X and regulates histone modifications and escape gene expression.Xist RNA重复序列E对于ASH2L募集到失活的X染色体至关重要,并调节组蛋白修饰和逃逸基因表达。
PLoS Genet. 2017 Jul 7;13(7):e1006890. doi: 10.1371/journal.pgen.1006890. eCollection 2017 Jul.
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Genes Dev. 2017 May 15;31(10):990-1006. doi: 10.1101/gad.301036.117.
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PCGF3/5-PRC1 initiates Polycomb recruitment in X chromosome inactivation.PCGF3/5-PRC1在X染色体失活过程中启动多梳蛋白招募。
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The nuclear matrix protein CIZ1 facilitates localization of Xist RNA to the inactive X-chromosome territory.核基质蛋白CIZ1促进Xist RNA定位于失活的X染色体区域。
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