Department of Chemical and Biomolecular Engineering, Rice University, 6100 Main Street, MS-667, Houston, TX, 77005, USA.
Department of Bioengineering, Rice University, Houston, TX, USA.
J Ind Microbiol Biotechnol. 2018 Jul;45(7):579-588. doi: 10.1007/s10295-018-2005-9. Epub 2018 Jan 12.
Synthetic biology, encompassing the design and construction of novel artificial biological pathways and organisms and the redesign of existing natural biological systems, is rapidly expanding the number of applications for which biological systems can play an integral role. In the context of chemical production, the combination of synthetic biology and metabolic engineering approaches continues to unlock the ability to biologically produce novel and complex molecules from a variety of feedstocks. Here, we utilize a synthetic approach to design and build a pathway to produce 2-hydroxyisovaleric acid in Escherichia coli and demonstrate how pathway design can be supplemented with metabolic engineering approaches to improve pathway performance from various carbon sources. Drawing inspiration from the native pathway for the synthesis of the 5-carbon amino acid L-valine, we exploit the decarboxylative condensation of two molecules of pyruvate, with subsequent reduction and dehydration reactions enabling the synthesis of 2-hydroxyisovaleric acid. Key to our approach was the utilization of an acetolactate synthase which minimized kinetic and regulatory constraints to ensure sufficient flux entering the pathway. Critical host modifications enabling maximum product synthesis from either glycerol or glucose were then examined, with the varying degree of reduction of these carbons sources playing a major role in the required host background. Through these engineering efforts, the designed pathway produced 6.2 g/L 2-hydroxyisovaleric acid from glycerol at 58% of maximum theoretical yield and 7.8 g/L 2-hydroxyisovaleric acid from glucose at 73% of maximum theoretical yield. These results demonstrate how the combination of synthetic biology and metabolic engineering approaches can facilitate bio-based chemical production.
合成生物学涵盖了新型人工生物途径和生物体的设计和构建,以及现有天然生物系统的重新设计,正在迅速增加生物系统可以发挥整体作用的应用数量。在化学生产方面,合成生物学和代谢工程方法的结合继续解锁了从各种原料生物生产新型复杂分子的能力。在这里,我们利用一种合成方法来设计和构建在大肠杆菌中生产 2-羟基异戊酸的途径,并展示了如何通过代谢工程方法补充途径设计来提高从各种碳源生产途径的性能。受用于合成 5 碳氨基酸 L-缬氨酸的天然途径的启发,我们利用丙酮酸的两个分子的脱羧缩合,随后进行还原和脱水反应,从而合成 2-羟基异戊酸。我们方法的关键是利用乙酰乳酸合酶,它最大限度地减少了动力学和调节限制,以确保有足够的通量进入途径。然后检查了使从甘油或葡萄糖最大程度合成产物的关键宿主修饰,这些碳源的还原程度在所需的宿主背景中起着重要作用。通过这些工程努力,设计的途径从甘油中生产出 6.2 g/L 的 2-羟基异戊酸,达到最大理论产量的 58%,从葡萄糖中生产出 7.8 g/L 的 2-羟基异戊酸,达到最大理论产量的 73%。这些结果表明,合成生物学和代谢工程方法的结合如何促进基于生物的化学生产。