Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, Melbourne, Victoria, Australia.
Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Victoria, Australia.
Clin Infect Dis. 2018 Jul 2;67(2):161-170. doi: 10.1093/cid/ciy027.
Klebsiella pneumoniae is a leading cause of extended-spectrum β-lactamase (ESBL)-producing hospital-associated infections, for which elderly patients are at increased risk.
We conducted a 1-year prospective cohort study, in which a third of patients admitted to 2 geriatric wards in a specialized hospital were recruited and screened for carriage of K. pneumoniae by microbiological culture. Clinical isolates were monitored via the hospital laboratory. Colonizing and clinical isolates were subjected to whole-genome sequencing and antimicrobial susceptibility testing.
K. pneumoniae throat carriage prevalence was 4.1%, rectal carriage 10.8%, and ESBL carriage 1.7%, and the incidence of K. pneumoniae infection was 1.2%. The isolates were diverse, and most patients were colonized or infected with a unique phylogenetic lineage, with no evidence of transmission in the wards. ESBL strains carried blaCTX-M-15 and belonged to clones associated with hospital-acquired ESBL infections in other countries (sequence type [ST] 29, ST323, and ST340). One also carried the carbapenemase blaIMP-26. Genomic and epidemiological data provided evidence that ESBL strains were acquired in the referring hospital. Nanopore sequencing also identified strain-to-strain transmission of a blaCTX-M-15 FIBK/FIIK plasmid in the referring hospital.
The data suggest the major source of K. pneumoniae was the patient's own gut microbiome, but ESBL strains were acquired in the referring hospital. This highlights the importance of the wider hospital network to understanding K. pneumoniae risk and infection prevention. Rectal screening for ESBL organisms on admission to geriatric wards could help inform patient management and infection control in such facilities.
肺炎克雷伯菌是产超广谱β-内酰胺酶(ESBL)的医院相关感染的主要原因,老年患者的风险增加。
我们进行了为期一年的前瞻性队列研究,其中专门医院的 2 个老年病房的三分之一患者被招募并通过微生物培养筛查肺炎克雷伯菌的携带情况。临床分离株由医院实验室监测。定植和临床分离株进行全基因组测序和药敏试验。
肺炎克雷伯菌咽部携带率为 4.1%,直肠携带率为 10.8%,ESBL 携带率为 1.7%,肺炎克雷伯菌感染发生率为 1.2%。分离株多样,大多数患者定植或感染独特的系统发育谱系,病房内无传播证据。ESBL 株携带 blaCTX-M-15,属于与其他国家医院获得性 ESBL 感染相关的克隆(序列类型 [ST] 29、ST323 和 ST340)。其中一株还携带碳青霉烯酶 blaIMP-26。基因组和流行病学数据提供了 ESBL 株在转诊医院获得的证据。纳米孔测序还鉴定了转诊医院中 blaCTX-M-15 FIBK/FIIK 质粒株间的传播。
数据表明,肺炎克雷伯菌的主要来源是患者自身的肠道微生物群,但 ESBL 株是在转诊医院获得的。这凸显了更广泛的医院网络对了解肺炎克雷伯菌风险和感染预防的重要性。在老年病房入院时对 ESBL 进行直肠筛查可能有助于为这些病房的患者管理和感染控制提供信息。