Dunivin Taylor K, Miller Justine, Shade Ashley
Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America.
Environmental and Integrative Toxicological Sciences Doctoral Program, Michigan State University, East Lansing, Michigan, United States of America.
PLoS One. 2018 Jan 25;13(1):e0191893. doi: 10.1371/journal.pone.0191893. eCollection 2018.
Arsenic (As), a toxic element, has impacted life since early Earth. Thus, microorganisms have evolved many As resistance and tolerance mechanisms to improve their survival outcomes given As exposure. We isolated As resistant bacteria from Centralia, PA, the site of an underground coal seam fire that has been burning since 1962. From a 57.4°C soil collected from a vent above the fire, we isolated 25 unique aerobic As resistant bacterial strains spanning seven genera. We examined their diversity, resistance gene content, transformation abilities, inhibitory concentrations, and growth phenotypes. Although As concentrations were low at the time of soil collection (2.58 ppm), isolates had high minimum inhibitory concentrations (MICs) of arsenate and arsenite (>300 mM and 20 mM respectively), and most isolates were capable of arsenate reduction. We screened isolates (PCR and sequencing) using 12 published primer sets for six As resistance genes (AsRGs). Genes encoding arsenate reductase (arsC) and arsenite efflux pumps (arsB, ACR3(2)) were present, and phylogenetic incongruence between 16S rRNA genes and AsRGs provided evidence for horizontal gene transfer. A detailed investigation of differences in isolate growth phenotypes across As concentrations (lag time to exponential growth, maximum growth rate, and maximum OD590) showed a relationship with taxonomy, providing information that could help to predict an isolate's performance given As exposure in situ. Our results suggest that microbiological management and remediation of environmental As could be informed by taxonomically-linked As tolerance, potential for resistance gene transferability, and the rare biosphere.
砷(As)作为一种有毒元素,自地球早期就对生命产生了影响。因此,微生物进化出了许多抗砷和耐砷机制,以提高其在砷暴露环境下的生存几率。我们从宾夕法尼亚州森特勒利亚分离出了抗砷细菌,该地自1962年起就发生着一场地下煤层火灾。从火灾上方通风口采集的57.4°C土壤中,我们分离出了25株独特的好氧抗砷细菌菌株,分属于七个属。我们研究了它们的多样性、抗性基因含量、转化能力、抑制浓度和生长表型。尽管在采集土壤时砷浓度较低(2.58 ppm),但分离株对砷酸盐和亚砷酸盐具有较高的最低抑制浓度(MICs)(分别>300 mM和20 mM),并且大多数分离株能够还原砷酸盐。我们使用针对六个抗砷基因(AsRGs)已发表的12套引物对分离株进行了筛选(PCR和测序)。编码砷酸盐还原酶(arsC)和亚砷酸盐外排泵(arsB、ACR3(2))的基因存在,并且16S rRNA基因与AsRGs之间的系统发育不一致为水平基因转移提供了证据。对不同砷浓度下分离株生长表型差异(从延迟期到指数生长期的时间、最大生长速率和最大OD590)的详细研究表明,其与分类学存在关联,这为预测分离株在原位砷暴露情况下的表现提供了信息。我们的结果表明,与分类学相关的耐砷性、抗性基因转移潜力和稀有生物圈可为环境砷的微生物管理和修复提供参考。